Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0128 ATGTTGACCAAGGTGGTGTACAATGACCCTTCATGGTGGTCCTTTAAGTGTCTCACGGTGACGCTACGCGGTGGAACAAACCCTAGGAAGAGAGAGAGGAGCAAGAAACCAAAGGCACATGCTTCTCTTCCTGATTACTTTGTTCGCCTGGAGAATACAAGTTCCAAAGACAAATTTTATTTAAGGAAGAGGACAAGGATGCGTCGGTGGTTTTGTTGTACTTGTCATGTTGAAGAATCTTACCCATCAAATGAAAATGAGCACCTGAAAAGTCCAAGGAATTATGATGATGGTGTCCAAAAAGGCTCAAAGATGTCAGCTCCTGTCAAACATGAAACACAAAAGGCAGCACCACCACCTATTGAAGTGCCAGCATTATCTTTAGAGGAGCTGAAGGAAAAGACTGACAACTTTGGATCAAAGGCATTGATTGGTGAAGGATCTTATGGAAGAGTGTATTATGCAACCTTAAATAATGGAAAAGCTGTTGCTGTGAAAAAGCTTGATGTCTCATCTGAAGCTGAATTAAATGTTGAGTTTTTGACCCAGGTTTCCATGGTCTCAAGATTGAAGCAAGAGAATTTTGTTGAGTTGCATGGTTATTGTGTTGAGGGAAATCTGCGTGTGCTGGCATATGAATTTGCAACTATGGGCTCACTTCATGACATATTACATGGTAGAAAGGGAGTTCAAGGGGCACAACCAGGGCCAACTCTTGACTGGGTGCAGCGAGTTAGAATTGCAGTTGATGCAGCAAGGGGATTGGAATATTTGCATGAGAAAGTTCAACCACCTATTATACACAGAGATATCAGATCAAGCAATGTGCTTATCTTTGAAGATTACAAGGCGAAGATAGCTGATTTTAACCTTTCCAATCAGGCCCCTGACATGGCTGCACGCCTTCATTCCACTCGTGTTTTGGGAACATTTGGTTATCATGCTCCAGAGTATGCAATGACTGGCCAATTGACTCAAAAAAGTGATGTCTACAGTTTTGGTGTTGTTCTCCTTGAGCTTCTCACAGGTAGAAAACCTGTTGATCATACCATGCCTCGTGGACAGCAGAGTCTTGTTACATGGGCTACCCCAAGATTGAGTGAAGATAAAGTTAAACAATGTGTGGATCCCAAATTGAAGGGAGAATATCCCCCGAAAGGAGTTGCAAAGCTGGCAGCTGTTGCAGCGCTGTGTGTGCAGTATGAATCTGAGTTCAGGCCGAATATGAGCATCGTTGTTAAAGCCCTTCAACCACTTCTAAAGCCTCCTGCTCCAGCGCCAGAAACTTGA 1290 0.4333 MLTKVVYNDPSWWSFKCLTVTLRGGTNPRKRERSKKPKAHASLPDYFVRLENTSSKDKFYLRKRTRMRRWFCCTCHVEESYPSNENEHLKSPRNYDDGVQKGSKMSAPVKHETQKAAPPPIEVPALSLEELKEKTDNFGSKALIGEGSYGRVYYATLNNGKAVAVKKLDVSSEAELNVEFLTQVSMVSRLKQENFVELHGYCVEGNLRVLAYEFATMGSLHDILHGRKGVQGAQPGPTLDWVQRVRIAVDAARGLEYLHEKVQPPIIHRDIRSSNVLIFEDYKAKIADFNLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLTQKSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSEDKVKQCVDPKLKGEYPPKGVAKLAAVAALCVQYESEFRPNMSIVVKALQPLLKPPAPAPET 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0128 429 Gene3D Transferase(Phosphotransferase) domain 1 216 423 - -
Glsi13g0128 429 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 70 424 - -
Glsi13g0128 429 FunFam PTI1-like tyrosine-protein kinase 3 100 214 - -
Glsi13g0128 429 SMART tyrkin_6 138 416 IPR020635 GO:0004713|GO:0006468
Glsi13g0128 429 Gene3D Phosphorylase Kinase; domain 1 100 214 - -
Glsi13g0128 429 MobiDBLite consensus disorder prediction 83 117 - -
Glsi13g0128 429 ProSitePatterns Tyrosine protein kinases specific active-site signature. 266 278 IPR008266 GO:0004672|GO:0006468
Glsi13g0128 429 ProSitePatterns Protein kinases ATP-binding region signature. 144 167 IPR017441 GO:0005524
Glsi13g0128 429 ProSiteProfiles Protein kinase domain profile. 138 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g0128 429 MobiDBLite consensus disorder prediction 83 97 - -
Glsi13g0128 429 FunFam PTI1-like tyrosine-protein kinase 3 216 426 - -
Glsi13g0128 429 SUPERFAMILY Protein kinase-like (PK-like) 121 422 IPR011009 -
Glsi13g0128 429 Pfam Protein tyrosine and serine/threonine kinase 143 416 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0128 Glsi-ChrGlsi13 7343244 7350924 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0128 71 417 Receptor kinase-like Gene Family AT4G02010 46.286 1.32e-91 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Glsi13g0128 PK_Tyr_Ser-Thr 1.2e-45 CL0016