Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0071 ATGGGCAACTGCTGGTTTACAAGGGAATCCTCTGTTTACAGAGTCTCATCCAATGCAAAGTCAGATTCACCAAAAGACCAAATCCATGCAATAAAACCACGGAATGATGACAGTAAGTTACCATCCAATCCTGAAGAAGTAGAAGTCCTACGCCGTGATTCAGCAGCAAATCCATTGGTTGCCTTCACATATGATGAACTGAAGGTAATCACTGGAAATTTTAGGCATGATCATCTCTTGGGAGGAGGAGGATTTGGAAGTGTCTATAAAGGGTTTATTTCTGAGGACGTGAGAGAGGGGCTTCCTCCTCTTCCTGTAGCTGTTAAGGTTCATGATGGTGACAACAGTCATCAAGGGCACAGAGAATGGCTGGCAGAAGTCATATTTCTGGGGCAGCTTTCTCATCCAAATTTGGTCAAATTAATTGGATACTGCTGCGAAAATGAACATAGGGTGCTAATATATGAGTATATGGCCCGTGGTAGCGTGGAAAACAATCTATTCTCTAGAGTATTGCTTCCCTTGCCATGGTCCATAAGAATGAAAATTGCATTTGGCGCTGCCAAGGGACTTGCATTTCTTCATGAAGCAGAGAAGCCTGTCATCTATCGTGATTTTAAGACATCAAATATTTTATTGGACCTGGAGTACAATGCAAAACTTTCTGACTTTGGCCTTGCCAAAGATGGACCTGTTGGAGACAAATCTCATGTCTCTACTCGCATAATGGGAACATATGGTTATGCTGCACCTGAATACATATTGACAGGGCATTTGACTCCTAGAAGTGATGTTTACAGTTTTGGTGTCGTTCTTCTTGAACTTCTGACTGGCAGAAAATCTCTAGATAAGTCACGATCTGCTCGGGAGCAGAACCTTACAGATTGGGCTCTTCCTTTGCTAAAAGAAAAAAAGAAATTGTTAAATATTATTGATCCAAGGCTGGAAGGAGATTATCCTATAAAAGGAGTTCACAAGGCGGCAATGCTGGCTTATCATTGTTTGAACCGCAATCCAAAAGCAAGGCCTTTAATGCGAGATATAGTAGATTCATTGGAGCCTTTGCAGGTTCACAATGAGGTCCCCATTGAGAAAACATTGACTATAATCAGTGAGGTTCCTGAAGCCGAATTAAAAAGGAAAGCTGCAGAATGA 1155 0.4173 MGNCWFTRESSVYRVSSNAKSDSPKDQIHAIKPRNDDSKLPSNPEEVEVLRRDSAANPLVAFTYDELKVITGNFRHDHLLGGGGFGSVYKGFISEDVREGLPPLPVAVKVHDGDNSHQGHREWLAEVIFLGQLSHPNLVKLIGYCCENEHRVLIYEYMARGSVENNLFSRVLLPLPWSIRMKIAFGAAKGLAFLHEAEKPVIYRDFKTSNILLDLEYNAKLSDFGLAKDGPVGDKSHVSTRIMGTYGYAAPEYILTGHLTPRSDVYSFGVVLLELLTGRKSLDKSRSAREQNLTDWALPLLKEKKKLLNIIDPRLEGDYPIKGVHKAAMLAYHCLNRNPKARPLMRDIVDSLEPLQVHNEVPIEKTLTIISEVPEAELKRKAAE 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0071 384 FunFam Serine/threonine-protein kinase BIK1 41 157 - -
Glsi13g0071 384 FunFam Probable serine/threonine-protein kinase PBL8 158 371 - -
Glsi13g0071 384 SUPERFAMILY Protein kinase-like (PK-like) 48 352 IPR011009 -
Glsi13g0071 384 MobiDBLite consensus disorder prediction 17 44 - -
Glsi13g0071 384 PANTHER OS01G0588500 PROTEIN-RELATED 34 356 - -
Glsi13g0071 384 MobiDBLite consensus disorder prediction 25 44 - -
Glsi13g0071 384 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Glsi13g0071 384 Gene3D Transferase(Phosphotransferase) domain 1 158 371 - -
Glsi13g0071 384 ProSiteProfiles Protein kinase domain profile. 74 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi13g0071 384 Pfam Protein tyrosine and serine/threonine kinase 77 352 IPR001245 GO:0004672|GO:0006468
Glsi13g0071 384 ProSitePatterns Protein kinases ATP-binding region signature. 80 109 IPR017441 GO:0005524
Glsi13g0071 384 Gene3D Phosphorylase Kinase; domain 1 36 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0071 Glsi-ChrGlsi13 4554494 4558651 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0071 3 352 Glycoside Hydrolase AT3G07070 46.832 3.74e-104 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Glsi13g0071 PK_Tyr_Ser-Thr 6.1e-44 CL0016