LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi13g0068	ATGCCGGAGCTTCGTTTAGGAGTGCGACGTGGTCGTGCTGCGTTAAGCCGTAAAAGCTCCGAACCCCTGACTAGAAAATACGTGAAGACTCGGGCTGCAGTCGCCAGGGAAGTTGAGGCGGTGAAGGAAAGGCCAAGGACTAGGTTGGCGTTGAAGAAATTGAAGCAGGAGAAGCCGGTGATTCTGTTATCGGAGCCCAATAGTGATATAGAGCGCGTTAAGGAAGAGAAGGCCAAGGAAGGAGTTGAAGGCGCGATGGGTGACGATAGTGGTGGATTGAGTGCTAATAAGGGTGTTGGGAAAGAAGATGATGGAAACACGGCGCCTTTTCCAGAGAAGGTTCAAGTAGGAGGATCGCCTCTATACAAAATAGAGAGGAAACTGGGTAAAGGTGGGTTTGGTCAAGTTTTTGTGGGCCGTCGTGTTACAGGTGGTAATGAGCATGCTACAGGTTCTGGTGCTACAGAGGTGGCTCTGAAACTTGAACACAGAAACAGTAAGGGGTGTAACTATGGCCCTCCTTATGAGTGGCAAGTGTACAACACCCTTGGTGGAAGTCATGGAATACCTAAAGTGCACTATAAAGGAAGACAAGGAGAATATTACATTATGGTCATGGACATGCTTGGTCCTAGCTTGTGGGATGTATGGAATTCCTCAAGCCAGTCGATGTCTGCGGAAATGGTTGCATGTATAGCTGTTGAGTCCTTATCAATTCTAGAGAAGATGCACTCCAGAGGTTATGTGCACGGAGATGTAAAACCCGAGAACTTTTTGCTTGGTCAGCCAGCTACACCGCAGGAGAAGAAATTGTTTCTTGTTGACCTTGGATTAGCAACAAAGTGGAGAGACACCTCCAGTGGGCAGCACGTTGAATATGATCAGCGTCCTGATATGTTTAGAGGGACTGTTCGATATGCTAGTGTTCATGCTCACTTAGGAAGAACTGCTAGTAGAAGGGATGATCTTGAATCTCTTGCATATACACTCATCTTTCTTCATAAAGGCCGGTTACCATGGCAAGGGTATCAGGGCGATAACAAATCCTTCCTTGTTTGCAAAAAGAAGATGGGAACATCTCCTGAGATGATGTGCTGCTTCTGCCCTGCTCCCCTTAGGCAATTTCTTGAGATTGTTGTGAACATGAAATTTGATGAAGAACCTAACTATACCAAGCTAATATCTTTGTTTGATGGTATAATTGCACCGAATCCTGCATTGCGACCAATTAATACTGAAGGTGCTCAAAAGGTTGGGCAAAAGCGGGGTAGATTGAATTTTGAGGAAGATGATTCACAGCCTAAAAAGAAGGTTCGTTTAGGGGTTCCAGCTACCCAATGGATATCGATTTACAATGCAAGACAGCCAATGAAACAGAGGTATCATTACAATGTGGCTGATGCAAGACTAGCTCAGCATGTGGACAGAGGAATTGCAGATGGCCTCCTTATCAGTTGTGTGGCGTCCTGTTCCAATCTTTGGGCACTTATTATGGATGCTGGAACTGGTTTTACGACTCAAGTTTACAAGATGTCACCTTTCTTCTTACACAAGGAGTGGATCATGGAGCAGTGGGAAAAAAACTTTTACATTACATCTATTGCTGGGGCCAATAATGGGAGCTCTCTTGTGGTGATGTCAAAAGGTACGCAGTATACTCAACAATCATACAAAGTAAGTGATTCGTTCCCCTTCAAATGGATAAACAAGAAGTGGAGAGAAGGTTTTCATGTGACCTCAATGGCTACTGCTGGAAGTCGCTGGGGTGTTGTTATGTCACGAAATGCTGGATTCAGTGATCAGGTAGTCGAACTTGATTTCCTTTATCCAAGCGAGGGCATCCACAGACGTTGGGACGGTGGTTACAGGATAACAGCAACTGCTGCTACATGGGATCAAGCTGCTCTTATATTGAGCATTCCAAGACGTAGGCCTGGTGATGAAACTCAGGAAACTTTGCGCACATCTCAATTTCCCAGCACGCATGTCAAGGAAAAATGGTCAAAAAATTTGTATCTTGCTTGTTTGTGCTATGGGCGCACAGTATGCTGA	2052	0.4527	MPELRLGVRRGRAALSRKSSEPLTRKYVKTRAAVAREVEAVKERPRTRLALKKLKQEKPVILLSEPNSDIERVKEEKAKEGVEGAMGDDSGGLSANKGVGKEDDGNTAPFPEKVQVGGSPLYKIERKLGKGGFGQVFVGRRVTGGNEHATGSGATEVALKLEHRNSKGCNYGPPYEWQVYNTLGGSHGIPKVHYKGRQGEYYIMVMDMLGPSLWDVWNSSSQSMSAEMVACIAVESLSILEKMHSRGYVHGDVKPENFLLGQPATPQEKKLFLVDLGLATKWRDTSSGQHVEYDQRPDMFRGTVRYASVHAHLGRTASRRDDLESLAYTLIFLHKGRLPWQGYQGDNKSFLVCKKKMGTSPEMMCCFCPAPLRQFLEIVVNMKFDEEPNYTKLISLFDGIIAPNPALRPINTEGAQKVGQKRGRLNFEEDDSQPKKKVRLGVPATQWISIYNARQPMKQRYHYNVADARLAQHVDRGIADGLLISCVASCSNLWALIMDAGTGFTTQVYKMSPFFLHKEWIMEQWEKNFYITSIAGANNGSSLVVMSKGTQYTQQSYKVSDSFPFKWINKKWREGFHVTSMATAGSRWGVVMSRNAGFSDQVVELDFLYPSEGIHRRWDGGYRITATAATWDQAALILSIPRRRPGDETQETLRTSQFPSTHVKEKWSKNLYLACLCYGRTVC	683

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi13g0068	683	CDD	STKc_CK1	122	397	-	-
	Glsi13g0068	683	ProSitePatterns	Protein kinases ATP-binding region signature.	128	160	IPR017441	GO:0005524
	Glsi13g0068	683	SMART	serkin_6	122	416	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi13g0068	683	MobiDBLite	consensus disorder prediction	78	114	-	-
	Glsi13g0068	683	PANTHER	CASEIN KINASE-RELATED	122	645	-	-
	Glsi13g0068	683	FunFam	casein kinase 1-like protein HD16	95	439	-	-
	Glsi13g0068	683	ProSiteProfiles	Protein kinase domain profile.	122	407	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi13g0068	683	Pfam	Protein kinase domain	122	409	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi13g0068	683	SUPERFAMILY	Protein kinase-like (PK-like)	122	407	IPR011009	-
	Glsi13g0068	683	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	248	260	IPR008271	GO:0004672\|GO:0006468
	Glsi13g0068	683	Gene3D	Transferase(Phosphotransferase) domain 1	101	440	-	-
	Glsi13g0068	683	MobiDBLite	consensus disorder prediction	1	25	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi13g0068	Glsi-ChrGlsi13	4415553	4426460	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi13g0068	95	279	AGC Kinase Gene Family	AT1G03920	25.126	6.86e-08	53.9

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CK1_CK1-Pl	Glsi13g0068		Pkinase	1.8e-17	CL0016