Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi13g0052 | ATGGGAAGCCATATGGGTTGGGGCATAATAGAGGAAGAGGGTTGGAGGAAGGGACCTTGGACTGCTGAGGAAGACAGGCTGCTCATTGAGTATGTCAGGATGCATGGCGAAGGCAGATGGAACTCTGTTGCTAGGCTAGCAGGATTGAAAAGAAATGGAAAAAGTTGCAGGTTGAGGTGGGTGAATTATTTGAGACCAGACCTCAAGAGGGGTCAGATAACACCACAAGAAGAAAGCATAATTCTAGAGCTGCATGCTAGGTGGGGAAACAGGTGGTCAACAATTGCAAGAAGCTTACCTGGTAGAACTGACAATGAGATAAAGAATTATTGGAGGACCCATTTCAAGAAAAAGGCAAAAAGTCCCATTGATGCTGCAGAAAAGGCAAAAAATCGCCTCTTGAGGAGGCAGCAGTTTCAACAGCAGCAGCAACAATTGCAATGCAACTTGGACATGAAGGGGATCATGGCCTTGCTCGAGGACAATGACCATAGAGTGCCTTCCAATCTATTCTCAATGGCCAACATCTACCCAAACACCTCGGAAGAGCAGGGCTACTTCTACTCTATGCTCAATAGCAATGCCTCTGCCTCAGAGGCCTCAAATGAAGAGATTCTGTGGGATGGGCTGTGGAACTTGGATGATGTTCATGGAAATTTCAGTGCAGCTACAACGACAAACAAAACCAGTCTGCAAAATTTAGTTGCTCCCTTCTGTTAG | 720 | 0.4611 | MGSHMGWGIIEEEGWRKGPWTAEEDRLLIEYVRMHGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKRGQITPQEESIILELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKAKSPIDAAEKAKNRLLRRQQFQQQQQQLQCNLDMKGIMALLEDNDHRVPSNLFSMANIYPNTSEEQGYFYSMLNSNASASEASNEEILWDGLWNLDDVHGNFSAATTTNKTSLQNLVAPFC | 239 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi13g0052 | 239 | CDD | SANT | 74 | 115 | IPR001005 | - | |
| Glsi13g0052 | 239 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 16 | 68 | IPR017930 | - | |
| Glsi13g0052 | 239 | PANTHER | MYB TRANSCRIPTION FACTOR-RELATED-RELATED | 12 | 174 | IPR044676 | GO:0003700|GO:0006355|GO:0043565 | |
| Glsi13g0052 | 239 | SMART | sant | 69 | 117 | IPR001005 | - | |
| Glsi13g0052 | 239 | SMART | sant | 16 | 66 | IPR001005 | - | |
| Glsi13g0052 | 239 | ProSiteProfiles | Myb-like domain profile. | 12 | 64 | IPR001005 | - | |
| Glsi13g0052 | 239 | CDD | SANT | 19 | 64 | IPR001005 | - | |
| Glsi13g0052 | 239 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 69 | 119 | IPR017930 | - | |
| Glsi13g0052 | 239 | Coils | Coil | 123 | 143 | - | - | |
| Glsi13g0052 | 239 | ProSiteProfiles | Myb-like domain profile. | 65 | 115 | IPR001005 | - | |
| Glsi13g0052 | 239 | Pfam | Myb-like DNA-binding domain | 17 | 64 | IPR001005 | - | |
| Glsi13g0052 | 239 | Pfam | Myb-like DNA-binding domain | 70 | 114 | IPR001005 | - | |
| Glsi13g0052 | 239 | Gene3D | - | 74 | 150 | - | - | |
| Glsi13g0052 | 239 | FunFam | Myb transcription factor | 17 | 69 | - | - | |
| Glsi13g0052 | 239 | Gene3D | - | 17 | 69 | - | - | |
| Glsi13g0052 | 239 | SUPERFAMILY | Homeodomain-like | 14 | 111 | IPR009057 | - | |
| Glsi13g0052 | 239 | FunFam | MYB transcription factor | 74 | 152 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Glsi13g0052 | Glsi-ChrGlsi13 | 3546120 | 3547268 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Glsi13g0052 | 12 | 239 | MYB Transcription Factor Family | AT3G24310 | 58.984 | 4.64e-91 | 267 |
Transcription factors information