Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0050 ATGGATTCTCTGCTACCATTTCAAGACCTCAATCACTTCCCTGACCCACACACCAGTATACCCACTCACAGCTCCGGTGCCACCACCAGCACCCCCACCCGCACCTCTGCTGCTACCAGCAGCACTGATTCCATCAATGCCGTACCCACTACCCCCTCCAAAATGTTAATCCCGACAGTAGTACCCAAACTCGAGCCTTTAGACGAGTTGGAGAATCCTGCTTTTGTTGAAACTTCAGGCATATCGATGCAAGAAGACAATGTGTACTCAGAGTTCTATCGAGTTTCTGATCTCTTTAGGACCGCGTTTGCCAAAAGCTTTCAGCAATTCGGAGATGTCAACGGTTTGGACCCAGAATCGCGGGCTATTGTTCCTGTGCCACAGTCTAACCAGGTTTCTTCGTTTGTTGTTACTCCGAGGCGGAACCGGCGCTGGAAGGAGCTCGTAAGGGTCACGGATATGACGAGTGAAGACGAAAGGTATTTCCGTGATGTTGTGAGAAGGACAAGGATGGTCTACGATTCGTTGCGCGTTTTGTCATCGGTGGAGAAGAAAAATAGTGATTTAGGTAAATGTAAGCGGATTCGAGGTGATTTGAAGGCTGCCTCGTCGTTGAGGGCCCGTGGGTTGTGGCTTAATCGTGATAAGCGGATAGTGGGTGCGATTCCAGGCGTTAACGTCGGCGATTTGTTTCTTTTTAGGATGGAGTTGTGCGTAGTTGGGTTGCACTGTCAGACACAAGCTGGAATCGATTATCTTCCTGCGAGCATGAACTCACATGGGGAGCCAATAGCGACTAGTGTTATAGTATCGGGTGGATATGAAGATGATGTAGATGATGGTGATGTGATAATCTATACGGGTCATGGAGGGCAAGATAAGCATTCAAGGCAAGTCGTTGACCAGAAGTTGGAAGGAGGAAACCTTGCATTGGAAAGAAGCATGCGATATGGGGTTGAAGTGCGGGTTATTCGGGGGTTCAAATATGAGGGAAGTGTTTCAACTTCACATAAGGTTTATGTTTATGATGGCTTGTATAGAATTGTTAATTGCTGGTTCGAAGTAGGTAAGTCTGGTTTTGGAGTTTACAAGTATAAGCTTTCGAGAATTGATGGGCAAGAAAAATTGGGTAGTGCGACTCTTAAACATGCTCAGCTTCTTAGGGCTAACCCATTGGAATTGGATTCCATGTATTGTTTTAGTCTTGATATTTCGATCAACAAGGAGAATGTTCCTATTCGTCTTTTCAATGACATCGATACTGATGATGACCCTCTTCGTTATGATTATCTTACCAAGACTGTTTTTCCTCATTTTGTATTTCATCAAAGTGGGAATGCTACTGGTTGTGACTGCGTCCAAGGTTGTGCCGATGACTGCTTTTGCGCGATGAAAAATGGAGGTGAATATCCTTATAATCAAAATGGTATTCTTGTTAGAGGGAAGCCTATAATTTTTGAGTGTGGCCCTTTCTGCCGTTGTCCTCCACATTGTCGGAATCGGGTTACCCAAAAGGGGTTAAAAATTAGATTGGAAGTGTTTAGGTCTAGGGAAACAAGTTGGGGAGTTAGGTCCCTGGACCTTATTCATGCTGGTGCTTTTATCTGTGAATATACTGGGGTTGTTGTGACAAAGGAGCTAGCTCAAATTTTGACAATGAATGGTGATGCATTGGTATATCCACATCGGTTTTCTGATAGGTGGGCAGAATGGGGGGATTTATCTCAGGTATGCTCTGATTATGTGCGTCCGTCATATCCCTCAATTCCTCCTTTAGATTTTGCCATGGATGTGTCAACAATGAGGAATGTTGCTTGCTATATGAGCCACAGTTCAATTCCAAATGTGTTTGTTCAGTTTGTTCTCTATGATCACAATAATTTGATGTTTCCTCACCTTATGCTTTTTGCATTGGAGACCATTCCTCCAATGAGGCAGCTCAGCCTTGATTATGGGGTGGCTGACGATTGGACAGGAAAGCTCTCTATATGTAACTGA 1998 0.4454 MDSLLPFQDLNHFPDPHTSIPTHSSGATTSTPTRTSAATSSTDSINAVPTTPSKMLIPTVVPKLEPLDELENPAFVETSGISMQEDNVYSEFYRVSDLFRTAFAKSFQQFGDVNGLDPESRAIVPVPQSNQVSSFVVTPRRNRRWKELVRVTDMTSEDERYFRDVVRRTRMVYDSLRVLSSVEKKNSDLGKCKRIRGDLKAASSLRARGLWLNRDKRIVGAIPGVNVGDLFLFRMELCVVGLHCQTQAGIDYLPASMNSHGEPIATSVIVSGGYEDDVDDGDVIIYTGHGGQDKHSRQVVDQKLEGGNLALERSMRYGVEVRVIRGFKYEGSVSTSHKVYVYDGLYRIVNCWFEVGKSGFGVYKYKLSRIDGQEKLGSATLKHAQLLRANPLELDSMYCFSLDISINKENVPIRLFNDIDTDDDPLRYDYLTKTVFPHFVFHQSGNATGCDCVQGCADDCFCAMKNGGEYPYNQNGILVRGKPIIFECGPFCRCPPHCRNRVTQKGLKIRLEVFRSRETSWGVRSLDLIHAGAFICEYTGVVVTKELAQILTMNGDALVYPHRFSDRWAEWGDLSQVCSDYVRPSYPSIPPLDFAMDVSTMRNVACYMSHSSIPNVFVQFVLYDHNNLMFPHLMLFALETIPPMRQLSLDYGVADDWTGKLSICN 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0050 665 MobiDBLite consensus disorder prediction 15 50 - -
Glsi13g0050 665 Pfam SET domain 521 652 IPR001214 GO:0005515
Glsi13g0050 665 SMART preset_2 401 493 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Glsi13g0050 665 SMART G9a_1 215 373 IPR003105 -
Glsi13g0050 665 Pfam Pre-SET motif 405 501 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Glsi13g0050 665 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 665 IPR025794 GO:0016571
Glsi13g0050 665 FunFam Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 202 385 - -
Glsi13g0050 665 MobiDBLite consensus disorder prediction 11 50 - -
Glsi13g0050 665 ProSiteProfiles SET domain profile. 509 652 IPR001214 GO:0005515
Glsi13g0050 665 ProSiteProfiles YDG domain profile. 220 369 IPR003105 -
Glsi13g0050 665 Gene3D - 217 377 IPR036987 -
Glsi13g0050 665 SUPERFAMILY PUA domain-like 201 380 IPR015947 -
Glsi13g0050 665 Gene3D SET domain 378 665 IPR046341 -
Glsi13g0050 665 ProSiteProfiles Pre-SET domain profile. 448 506 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Glsi13g0050 665 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 60 653 - -
Glsi13g0050 665 SMART set_7 509 658 IPR001214 GO:0005515
Glsi13g0050 665 SUPERFAMILY SET domain 410 661 IPR046341 -
Glsi13g0050 665 Pfam SAD/SRA domain 219 373 IPR003105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0050 Glsi-ChrGlsi13 3283075 3285072 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0050 163 654 Su(var)3-9 homologs AT5G04940 40.557 2.65e-111 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Glsi13g0050 SAD_SRA 6.7e-51 CL0178