Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0037 ATGGTTCGGTTTGGAACAACCATTCAAAACATTACTTGTAAGGCAAGTGGATTGGATTTTGTTGTTTTGGAAATCCTTGACCCATCCCCGTCCTGCGGCCCAATCAAGGTCGTTCCATTGAGGACAACATCTATTTTACTCACTTCCCCATATCCTTACTTGTCCACCCAAAAAAAAAAAAAAAAAAATCTTCCCCATATCCTTCAACGCGCTCTCTGCTCTTTGCGAAGCTCCATTGCAATAAGCACTAAGGATTGGCAGTTTCAAAAACCCAAAACCCTAGTTGACGACTCAGCCACCATGAACTGCTCCATCTCCGGCGAGGTTCCGGAAGAGCCGGTGGTGTCTAAGAAGTCCGGGTTGCTCTACGAAAGGCGTTTAATTGAGAGGCACATATCGGATTATGGAAAGTGCCCAATTACTGGAGAACCACTTACTTTGGACGACATTGTTCCAATCAAAACAGGCAAGATAGTAAAGCCCAGACCTGTGCAGGCAGCAAGTATCCCTGGCATGCTTGGAATGTTCCAAAATGAATGGGATGGACTGATGCTATCTAATTTTGCATTGGAGCAACAATTACACACAGCAAGGCAAGAGCTAAGTCATGCCTTATATCAACATGATGCTGCTTGCCGAGTGATTGCAAGACTTAAAAAGGAAAGAGATGAAGCAAGGTCATTTCTTGCACAGTCAGAAAGACAGTTCACCGTTTCTGCACCAAATGCAATAACAGCGAACGCATCTCTGAGCAATGGGAAAAGAGCTGCTGAGGATGAGCTGGTCTCTGGCGGGAAGAAACTACATCCTGGAATAACTTCTACTGTAATTTCTGAGTTAACTGAGTGTAATGCGTCTCTCTCGCAGCAGAGGAAGAGGCGGCAGATTCCTGCAACTTTGGCTCCTGTTGAAGCTGTAGAGGGATATACCCAGATATCTAGTCATCCCTTTCACAAAACAAGCAAACCAGGCATTGTATCTATGGATATCCTATATTCTAAGGACTTAATTGCAACTGGAGGGATTGATACAAATGCTGTCATTTTTGACCGACCATCAGGACAGATATTATCCACACTTAGTGGTCACTCAAAAAAGGTTACAAGTGTAAAGTTTATAGCTCAGGGTGATCTGTTCTTAACTGGTTCAGCAGATAAGACAGTTCGTTTGTGGCAAGGATCAGATGATGGTAACTATAATTGTAGGCATATATTGAAGGATCATACGGCTGAGGTGCAAGCGGTCACCGTCCATGCAACCAATAACTACTTTGTGACTGCTTCACTTGACAACACTTGGTGCTTTTATGAACTTTCTTCAGGGACATGTTTGACTCAGGTTTCAGACCATTCTGGATCTTCTGAAGGCTATACATCTGCAGCTTTTCATCCTGATGGTCTTATTCTTGGAACTGGCACTGCAGAAGCTCTTGTTAAGATATGGGATGTAAAAAGTCAGGCTAATGTTGCTAGGTTTGATGGACATGTAGGGGCAGTGACTGCCATTTCCTTTTCCGAGAATGGTTACTTCCTTGCGACTGCTGCTCATGATGGAGTAAAGCTTTGGGATCTACGTAAATTAAAAAACTTCCGGAATTTCTCTCCATATGACCCAGATACTCCAACGAACTCAGTGGAATTCGACCACAGTGGATCGTACCTTGCAGTTGCAGGATCTGATATAAGGATGTACCAAGTCGCAAATGTGAAATCTGAATGGAACTGTATCAAAACTTTTCCTGATTTATCTGGAACAGGGAAAGCCACTTGCGTAAAATTTGGTCCAGATGCAAAATATATAGCAGTGGGATCAATGGACCGAAATCTTCGAATATTTGGCCTCCCTAATGAGGATGGTCCAACTGAGTCATAA 1872 0.4332 MVRFGTTIQNITCKASGLDFVVLEILDPSPSCGPIKVVPLRTTSILLTSPYPYLSTQKKKKKNLPHILQRALCSLRSSIAISTKDWQFQKPKTLVDDSATMNCSISGEVPEEPVVSKKSGLLYERRLIERHISDYGKCPITGEPLTLDDIVPIKTGKIVKPRPVQAASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSFLAQSERQFTVSAPNAITANASLSNGKRAAEDELVSGGKKLHPGITSTVISELTECNASLSQQRKRRQIPATLAPVEAVEGYTQISSHPFHKTSKPGIVSMDILYSKDLIATGGIDTNAVIFDRPSGQILSTLSGHSKKVTSVKFIAQGDLFLTGSADKTVRLWQGSDDGNYNCRHILKDHTAEVQAVTVHATNNYFVTASLDNTWCFYELSSGTCLTQVSDHSGSSEGYTSAAFHPDGLILGTGTAEALVKIWDVKSQANVARFDGHVGAVTAISFSENGYFLATAAHDGVKLWDLRKLKNFRNFSPYDPDTPTNSVEFDHSGSYLAVAGSDIRMYQVANVKSEWNCIKTFPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRIFGLPNEDGPTES 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0037 623 SMART Ubox_2 100 166 IPR003613 GO:0004842|GO:0016567
Glsi13g0037 623 SUPERFAMILY RING/U-box 101 153 - -
Glsi13g0037 623 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 450 485 - -
Glsi13g0037 623 ProSiteProfiles U-box domain profile. 96 170 IPR003613 GO:0004842|GO:0016567
Glsi13g0037 623 Pfam WD domain, G-beta repeat 354 391 IPR001680 GO:0005515
Glsi13g0037 623 Pfam WD domain, G-beta repeat 488 523 IPR001680 GO:0005515
Glsi13g0037 623 Pfam WD domain, G-beta repeat 573 612 IPR001680 GO:0005515
Glsi13g0037 623 SUPERFAMILY WD40 repeat-like 322 612 IPR036322 GO:0005515
Glsi13g0037 623 Pfam Prp19/Pso4-like 166 230 IPR013915 -
Glsi13g0037 623 CDD WD40 324 612 - -
Glsi13g0037 623 Coils Coil 215 235 - -
Glsi13g0037 623 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 160 IPR013083 -
Glsi13g0037 623 ProSiteProfiles Trp-Asp (WD) repeats profile. 360 392 IPR001680 GO:0005515
Glsi13g0037 623 ProSiteProfiles Trp-Asp (WD) repeats profile. 450 491 IPR001680 GO:0005515
Glsi13g0037 623 ProSiteProfiles Trp-Asp (WD) repeats profile. 492 532 IPR001680 GO:0005515
Glsi13g0037 623 Gene3D - 300 614 IPR015943 GO:0005515
Glsi13g0037 623 PANTHER PRE-MRNA-PROCESSING FACTOR 19 99 614 IPR038959 GO:0000398|GO:0000974|GO:0006281|GO:0061630
Glsi13g0037 623 FunFam pre-mRNA-processing factor 19 297 614 - -
Glsi13g0037 623 CDD RING-Ubox_PRP19 101 154 - -
Glsi13g0037 623 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 492 525 - -
Glsi13g0037 623 FunFam Pre-mRNA-processing factor 19, putative 101 158 - -
Glsi13g0037 623 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 360 392 - -
Glsi13g0037 623 ProSiteProfiles Trp-Asp (WD) repeats profile. 405 446 IPR001680 GO:0005515
Glsi13g0037 623 SMART WD40_4 398 437 IPR001680 GO:0005515
Glsi13g0037 623 SMART WD40_4 526 565 IPR001680 GO:0005515
Glsi13g0037 623 SMART WD40_4 485 523 IPR001680 GO:0005515
Glsi13g0037 623 SMART WD40_4 572 613 IPR001680 GO:0005515
Glsi13g0037 623 SMART WD40_4 308 350 IPR001680 GO:0005515
Glsi13g0037 623 SMART WD40_4 440 482 IPR001680 GO:0005515
Glsi13g0037 623 SMART WD40_4 353 392 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0037 Glsi-ChrGlsi13 2916512 2930799 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0037 101 623 U-box Gene Family AT1G04510 74.618 0.0 819