Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0017 ATGTCTTCCTCTGAATCAAATGTCAACAATGCCCCATCATCTACACCATACAGCGCCCCACCTGTGATCATAGCTTTTACTCTCGGCATCCTTATCTGTTTCTTCGTGAGTTTCTTCTTCATCTATTTGTGTAGGTGTTGTTATGTAAACGTCGTCCACACTTGGGCTTTTCAACGCACTGCCTCAGGCACCCTTGTCCGTCTTTCCCCCACCGCATCTCCATATAGAGGCCTTGATCCTTCACTGCTACAAATCTTCCCCACCTTTTCCTATGCGTCTGTGAAGGAGCTTCATGGGAAAAAATATAGCTTAGAATGTGCCATTTGCTTGCTAGAATTCGAGGACGACAGCTCGCTTCGTTTGTTGACCTTTTGCTGCCATGTCTTCCACCAAGAATGTATTGACCTTTGGCTTTGTTCGCACAAGACGTGCCCTGTTTGTCGTACAGATCTTGAGTCACCTACAAATCAAATGCATAAATGTCAGGAGTCCTGCGAGATGCATCATGAAGAGATCAGCAGAGAGCCCTTAACGGAGAATGAGATACGCATTGATGTAAAAGAAGATGAAAGTGATACATCAGAGAGACATGAAGAAGCTGCTTCTTGTAGCCAGAAAGTGGTAGAAGAACAGAAGAGGTTTTCACGGTCACACTCAACGGGGCATTCCATAGTTGTAACTGAAGGAGGACATAACCAAGTTCGAAAGGATGATAAATATACGTTGATATTGCCAGAGCAGATTGGTATAAAATTCATAAAAAGAGGAGGACACAAATACACAAAAAGTTGTGCAACGTACAAAGAGATGGCAACTCTTTGTAGTAAATGTTCCATTGTTGAAGCAATATCAGGGTGTTCTTCTCGTGGTGAGACAGAAAGGGCTTAA 888 0.4336 MSSSESNVNNAPSSTPYSAPPVIIAFTLGILICFFVSFFFIYLCRCCYVNVVHTWAFQRTASGTLVRLSPTASPYRGLDPSLLQIFPTFSYASVKELHGKKYSLECAICLLEFEDDSSLRLLTFCCHVFHQECIDLWLCSHKTCPVCRTDLESPTNQMHKCQESCEMHHEEISREPLTENEIRIDVKEDESDTSERHEEAASCSQKVVEEQKRFSRSHSTGHSIVVTEGGHNQVRKDDKYTLILPEQIGIKFIKRGGHKYTKSCATYKEMATLCSKCSIVEAISGCSSRGETERA 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0017 295 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Glsi13g0017 295 SMART ring_2 106 147 IPR001841 -
Glsi13g0017 295 FunFam E3 ubiquitin-protein ligase ATL6 67 154 - -
Glsi13g0017 295 PANTHER RING FINGER DOMAIN-CONTAINING 9 157 - -
Glsi13g0017 295 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 155 IPR013083 -
Glsi13g0017 295 Pfam Ring finger domain 105 148 IPR001841 -
Glsi13g0017 295 SUPERFAMILY RING/U-box 100 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0017 Glsi-ChrGlsi13 1991548 1992435 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0017 3 236 C3H Transcription Factor Family AT2G35420 34.310 7.09e-38 133