Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi13g0009 ATGATTAGGTGTATATGTTCTGGGGAGCAAATAAGGATAGATGAATTGGGTTATTCATCAGAGTCCTTGGCAACGAGGGACTACTCAGCAAGTGGTTATTCTTCACGCCCTGGTGAAATTGAAACAAAGGTGGACAATAGCAACATTGAAGAAGCAGAGTCGTCTCTTCGTGAAAGCGGTTATTTGAACTATGAGGAAGCTAGAGCCTTATTAGGAAGACTTGAGTATCAGAAAGGTAATATAGAAGCTGCTCTTCATGTATTTGGAGGAATAGATATGGCTGCTATAACTCCCAAAATGAAAATCTCCATATCTCGAAGATGCGAAACAAATAAGCGCCATTCACAAAGTGATGGAGTGCCATCTATGTCAATGCATGCTGTTAGTTTACTCCTTGAAGCTGTTTTCCTCAAAGCAAAATCATTACAAACTCTTGGAAGGTTTCAAGAAGCTGCTCAATCATGCAAAACTATTTTAGATACTATTGAATCTGCACTGCCAGAAGGCTTGTCTGTAAACTTTGCTTCAGACTGTAAAATACAAGAGACTCTAACAGTGGCTGTAGAGCTTCTTCCAGAGTTGTGGAAGCTTTCTGGCTTTCCCCAAGATGTCATTTTATCATATAGGAGGGCCCTGCTTTATCATTGGAATCTTGACATTGAAACTACTGCAAGAATACAAAAGGAATTTGCTATGTTTCTTTTGTACAGTGGTTGCGAAGCAAGCCCTCCAGCACTTCGTCTGCAGTTGGATGGTTCCTATGTGCCAAGAAACAATACAGAAGAGGCTGTTCTTCTGCTGCTGATTCTGCTGAGGGATTTTGTTCTTGGAAGGACTATGTGGGACCCTTCAATAATCAATCACCTGTCTTTTGCTCTAAGCGTTTCCAGGGAACTAATGACTTTAGCCCATCAGGTTGAGGAATTGCTTCCAGGGACTATAGAGAGAAAAGAAAAATATTTTACTTTAGCTCTTTGTTACTATGGGGAAGGTGAGCATATGATTGCTTTGGATCTTCTGAGGAACTTCTTGAATAACAAAGAGAACTCAGACTGCACACAAGAATTACTACTAGCTTCTAAAATTTGTGGAGAAAACATGGTTAGTGTTGAAGAAGGGATCAACTATTCTTGCAAAGCCATCTCTCAATTGCAAGGAAAATGCCTGCAAATGGTAGCCCTTGCAACTTGCATACGAGGGGTTCTACTTTCCTCAAAATCCAGATTGGTTGCTTCTGAATCAGAGAGGGTTTTAAAGAAGTCTGAAGCACTCAGTGCACTAAAAACTGCTGAGAGATTGATGAGGGAAAGTGATCCATATGTTGTCTTTCATCTTTGTCTAGAATATGCTGAGCAGAGGAAGTTGAATATTGCTCTTGATCATGCCAAGCAACTGGTTGAACTTGAGGCTGGGTCTAGTATTAAAGGATATATGCTTCTAGCACGGATATTATCAGCTCAACGAAAGTTTGCTGATGCAGAAATTGTTATTGATGCTGCTCTCGATCAAACTGGAAAATGGGATCAAGGAGAATTATTGCAAACTAAAGCTAAACTGCAGATTGCCCAAGGCAAGTTAAAGAACGCTGTTGAAACATATACTCTTCTTCTTGCTATTCTTCAGGTCCAGACTAAAAGCTTAGGTATTTCCAGTAAGTTTCTGAAGAGTAAGGGAAACCGTGATAGAAGACTGGAAATGGAAATATGGCATCATTTAGCCAATGTTTACATGAATTTGTCCCAATGGCGGGATGCCGAAGTTTGTCTTGCAAAATCTCAGGCTATCAATCCCTATTCTGCTTCTAGATGGCACTCCACAGGTCTGCTTTATGAAGCCAGAGGTCTTCACCAAGAAGCTTTGAAATCATTCAGGACAGCATTAGATATCGAGCCCAGCTATGTGCCGAGTTTGATATCTGCATCTTGTGTCCTCAGGCAGCTTGGTGGTCAATCTTCATCAATTGCAAGAAGCCTTCTTTTGGATGCACTACGGCTCGATAGAACAAACTCATCTGCTTGGTACAATCTTGGGCTGCTTTACAAAGCTGATGAGGGGGCATCAGCACTGGAAGCTGCTGAATGCTTTGAGGCAGCAGCTCTTCTTGAAGAATCTTCTCCTATTGAACCCTTTAGATAG 2136 0.412 MIRCICSGEQIRIDELGYSSESLATRDYSASGYSSRPGEIETKVDNSNIEEAESSLRESGYLNYEEARALLGRLEYQKGNIEAALHVFGGIDMAAITPKMKISISRRCETNKRHSQSDGVPSMSMHAVSLLLEAVFLKAKSLQTLGRFQEAAQSCKTILDTIESALPEGLSVNFASDCKIQETLTVAVELLPELWKLSGFPQDVILSYRRALLYHWNLDIETTARIQKEFAMFLLYSGCEASPPALRLQLDGSYVPRNNTEEAVLLLLILLRDFVLGRTMWDPSIINHLSFALSVSRELMTLAHQVEELLPGTIERKEKYFTLALCYYGEGEHMIALDLLRNFLNNKENSDCTQELLLASKICGENMVSVEEGINYSCKAISQLQGKCLQMVALATCIRGVLLSSKSRLVASESERVLKKSEALSALKTAERLMRESDPYVVFHLCLEYAEQRKLNIALDHAKQLVELEAGSSIKGYMLLARILSAQRKFADAEIVIDAALDQTGKWDQGELLQTKAKLQIAQGKLKNAVETYTLLLAILQVQTKSLGISSKFLKSKGNRDRRLEMEIWHHLANVYMNLSQWRDAEVCLAKSQAINPYSASRWHSTGLLYEARGLHQEALKSFRTALDIEPSYVPSLISASCVLRQLGGQSSSIARSLLLDALRLDRTNSSAWYNLGLLYKADEGASALEAAECFEAAALLEESSPIEPFR 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi13g0009 711 SMART tpr_5 670 705 IPR019734 GO:0005515
Glsi13g0009 711 SMART tpr_5 600 633 IPR019734 GO:0005515
Glsi13g0009 711 SMART tpr_5 474 507 IPR019734 GO:0005515
Glsi13g0009 711 SMART tpr_5 566 599 IPR019734 GO:0005515
Glsi13g0009 711 SMART tpr_5 510 543 IPR019734 GO:0005515
Glsi13g0009 711 SMART tpr_5 132 165 IPR019734 GO:0005515
Glsi13g0009 711 Gene3D Tetratricopeptide repeat domain 38 564 IPR011990 GO:0005515
Glsi13g0009 711 SUPERFAMILY TPR-like 438 538 IPR011990 GO:0005515
Glsi13g0009 711 Gene3D Tetratricopeptide repeat domain 565 707 IPR011990 GO:0005515
Glsi13g0009 711 PANTHER PROTEIN NPG1 2 711 IPR043376 -
Glsi13g0009 711 ProSiteProfiles TPR repeat profile. 600 633 IPR019734 GO:0005515
Glsi13g0009 711 Pfam Tetratricopeptide repeat 602 632 IPR019734 GO:0005515
Glsi13g0009 711 SUPERFAMILY TPR-like 511 682 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi13g0009 Glsi-ChrGlsi13 774141 779061 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi13g0009 2 711 Calmodulin-binding Proteins AT4G28600 53.591 0.0 727