Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2887 ATGCTGCGGGCCAAAATGGAAGAAGTTTGTCTAAATAGTGAGCCGGTTTTTGATGAGAGCGATGAGTTTGATGCTGAGGGGAGCTCTTCTATGGCAGAGCTTGATCATGAATCTTCAGACTCACGATCAAAGAACCCTCCACCACCAACTGTGGGTCTGGAGTTTGATTCTTTTGACAATGTTTACAACTTTTACAATGCTTATGCAAAAGAACAAGGTTTTGGCATCAGAGTGAGCAACTCATGGTTTAGATCAAAGAGAAAAGAGCGTTATAGAGCAAAACTTAGCTGCAGTAGTGCTGGTTTCAAGAAAAAAAGTGAAGCCAATAATCCAAGACCAGAAACAAGAACTGGTTGTCCTGCAATGATAGTCATTAGGATGGTTGATTCCAAAAGATGGAGGATTGTGGAGGTTGAACTTCAACACAATCATCAAGTGAGTCCACAGATCAAGCGGTTCTATAAGTCACATAAGAAAATGATCCTAGCAGCCAGAAAAGCACAACCACCGCCAGAGCCTATTACAGAAATACATACTATTAAGTTGTATCGAACAGCTGTCATGGATGCTGGTTACAATGGATACTCAAATTTTGTTGAAGGACAGAATATCAATTTTGATAATTTAAAATATTTGGAACTTAAAGAAGGGGATGCCTATGCCATTTATAATTATTTTTGCCGAATGAAATTAACCAACCCAAATTTCTTTTACTTATTTGATATTGATGATGATGGACACCTAAGAAATGTGTTTTGGGCTGATGCCAAGTCAAGGGTGTCTTATGGTTACTTTAATGACACTGTTACTATAGATACAACTTGTTTGGCAAACAAATATGAGATCCCCCTGATATCATTTGTTGGTGTAAACCACCATGGACAGTCGGTGCTATTGGGCTGTGCCTTCCTTGGGCATGAAACGGTCGAATATTTTGTTTGGATATTCAATGCATGGCTTAAATGCATGCTTGGTTGCCCACCACATGTTGTTATTACTGACCAGTGCAAGCCTTTGCAAACTGCAGTTGCTCAGGTTTTTCCTCATTCCCGTCATTGTTATTCTTTGCAGTATATAATGCACAGAGTTCCAGAAAAGTTGGGAGGGTTGAAGGGATATGAAGCAATCAAAAGACAATTGAACAAAGCAATTTACGAGTCCTTAAAGATAGTTGAGTTTGAAACTTCTTGGGCTGATATGATCAGACAGCATGGACTGGGGGATAACAAATGGCTTCAGACATTGTATAATGATAGGCATCTGTGGGTTCCAGTTTACCTAAAAGACACTTTTTTTGCAGGAATGATCCCAACAAAACAAAATGAGGGCCTGGCTGCATTCTTCGATGGATATGTACATAAACATACATCCTTTAAGGAATTTGTTGACAAGTATGACCTAGCTCTACACAGGAAGCACTGGAAAGATGCCATGGCAGAGTTGGAGTCAAGGAAATTAAGCTTTGAATTGAATACAAGATGTAATTTTGAGCTGCAGCTCTCAAAGTTGTATACAAAAGAAATCTTTAAAAAGTTCCAATCTGAGGTTGAGGGTATGTACTCTTGCTTCCACACAAGACAGGTAAATGTTAATGGATCCATAATAACATACATAGTGAAAGAACGAGTTGAAGTTGGGGGAAATGAAAAGGAAGTTAAAAAATTTGAAGTTTTGTATGAGACAACAGAGCTGGATATTCGTTGTATTTGCAGTTTGTTCAATTACAAAGGTTACCTATGTAGGCATGCACTGAATGTTCTCAATTATAATGGTGTGGAGGAAATCCCATCTCGGTATATCCTGCAACGTTGGAAGAGAGATTTCAAACGAAGGTTTATTCAAGATCATGTCTCTGGTGATGTTGATGCATACAATTCTGTTTACTGGTATAAACATCTTTTTAACAATGCTCTTCCGGTACTAGAAGAAGGGGCACAATCTCAGGAGCATTATATGATTGCTTTACAAGAACTGGAAGAGTTGTTAAACAAGTTTGATTTAGTGGAGAACAACTTATTGTAA 2022 0.3843 MLRAKMEEVCLNSEPVFDESDEFDAEGSSSMAELDHESSDSRSKNPPPPTVGLEFDSFDNVYNFYNAYAKEQGFGIRVSNSWFRSKRKERYRAKLSCSSAGFKKKSEANNPRPETRTGCPAMIVIRMVDSKRWRIVEVELQHNHQVSPQIKRFYKSHKKMILAARKAQPPPEPITEIHTIKLYRTAVMDAGYNGYSNFVEGQNINFDNLKYLELKEGDAYAIYNYFCRMKLTNPNFFYLFDIDDDGHLRNVFWADAKSRVSYGYFNDTVTIDTTCLANKYEIPLISFVGVNHHGQSVLLGCAFLGHETVEYFVWIFNAWLKCMLGCPPHVVITDQCKPLQTAVAQVFPHSRHCYSLQYIMHRVPEKLGGLKGYEAIKRQLNKAIYESLKIVEFETSWADMIRQHGLGDNKWLQTLYNDRHLWVPVYLKDTFFAGMIPTKQNEGLAAFFDGYVHKHTSFKEFVDKYDLALHRKHWKDAMAELESRKLSFELNTRCNFELQLSKLYTKEIFKKFQSEVEGMYSCFHTRQVNVNGSIITYIVKERVEVGGNEKEVKKFEVLYETTELDIRCICSLFNYKGYLCRHALNVLNYNGVEEIPSRYILQRWKRDFKRRFIQDHVSGDVDAYNSVYWYKHLFNNALPVLEEGAQSQEHYMIALQELEELLNKFDLVENNLL 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2887 673 ProSiteProfiles Zinc finger SWIM-type profile. 555 591 IPR007527 GO:0008270
Glsi12g2887 673 Pfam FAR1 DNA-binding domain 63 147 IPR004330 -
Glsi12g2887 673 Coils Coil 651 673 - -
Glsi12g2887 673 Pfam MULE transposase domain 269 361 IPR018289 -
Glsi12g2887 673 Pfam SWIM zinc finger 563 588 IPR007527 GO:0008270
Glsi12g2887 673 MobiDBLite consensus disorder prediction 14 28 - -
Glsi12g2887 673 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 38 665 IPR031052 GO:0006355
Glsi12g2887 673 SMART 26again6 566 593 IPR006564 GO:0008270
Glsi12g2887 673 MobiDBLite consensus disorder prediction 13 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2887 Glsi-ChrGlsi12 41991324 42006745 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Glsi12g2887 MULE 4.3e-22 CL0219