Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2860 ATGAACAGGGACAAGAGGAAAATGGCAACTTTAGTTGAGCCTCCGAATAACATTAGTCCAAAGGGGAAGCATTATTACTCGATATGGCAAACATTGTTTGAGATTGATACAAAGTACGTTCCAATAAAACCCATTGGCCGAGGAGCATATGGTGTAGTGTGTTCTTCCATCAACAGGGAAACCAATGAGAAAGTTGCCATTAAGAAAATTGGTAATATATTTGAGAATCGCATTGATGCGCTGAGAACGCTAAGGGAGTTGAAGCTGCTAAGACATATTAGGCACGAGAATGTGATTGCTTTGAAGGATGTTATGTTGCCTGTCCAGAGAACAAGTTTTAAGGATGTGTACTTGGTTTATGAGCTCATGGATACAGATCTTCATCAAATTATAAAGTCCTCGCAGCCCCTTTCCAGTGACCATTGCAAATATTTCATATTTCAGCTGCTTAGAGGTCTTAAGTATCTTCATTCTGCAAATATCCTTCACCGTGACTTGAAGCCTGGCAATCTGCTCATCAATGCTAATTGTGATTTGAAGATATGTGACTTTGGGCTTGCACGAACCAGTGGAGGTGATGGCCAATTCATGACAGAGTATGTTGTCACTCGCTGGTATCGTGCTCCAGAGCTCCTATTATGCTGTGACAATTACGGAACTTCTATTGATGTGTGGTCTGTAGGATGCATTTTTGCTGAGATTCTTGGTAGAAAACCAATATTTCCTGGAACAGAATGCCTCAACCAGTTGAAACTAATTATTAGTGTTCTTGGAAGCCAGTATGAGCCTGATCTTGCATTTATTGATAATCCGAAGGCCAGGAGGTTTATCAAATCACTGCCTTATACAAGGGGCAGACACTTCTCTCAGCTATACCCACAAGCAGATCCATTAGCCATAGATTTATTGCAAAAAATGCTGGTGTTTGATCCAACCAAGAGAATTACTATCATAGAAGCACTCCAACACCCATATATGGCAGGCCTGTATGATCCAAGGTGTAATCCTCCTGCCCAGGTTCCCATCAATCTTGACATAGATGAAAATTGGGGGGAACAGATGATTAGGGAAATGATGTGGAATGAGATGCTTCATTATCATCCTGAAGCTTCTGCCAATGCATAG 1125 0.4124 MNRDKRKMATLVEPPNNISPKGKHYYSIWQTLFEIDTKYVPIKPIGRGAYGVVCSSINRETNEKVAIKKIGNIFENRIDALRTLRELKLLRHIRHENVIALKDVMLPVQRTSFKDVYLVYELMDTDLHQIIKSSQPLSSDHCKYFIFQLLRGLKYLHSANILHRDLKPGNLLINANCDLKICDFGLARTSGGDGQFMTEYVVTRWYRAPELLLCCDNYGTSIDVWSVGCIFAEILGRKPIFPGTECLNQLKLIISVLGSQYEPDLAFIDNPKARRFIKSLPYTRGRHFSQLYPQADPLAIDLLQKMLVFDPTKRITIIEALQHPYMAGLYDPRCNPPAQVPINLDIDENWGEQMIREMMWNEMLHYHPEASANA 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2860 374 FunFam Mitogen-activated protein kinase 25 133 - -
Glsi12g2860 374 Gene3D Phosphorylase Kinase; domain 1 26 362 - -
Glsi12g2860 374 FunFam Mitogen-activated protein kinase 123 352 - -
Glsi12g2860 374 Pfam Protein kinase domain 40 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g2860 374 SMART serkin_6 39 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g2860 374 SUPERFAMILY Protein kinase-like (PK-like) 31 332 IPR011009 -
Glsi12g2860 374 ProSiteProfiles Protein kinase domain profile. 39 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g2860 374 CDD STKc_TEY_MAPK 33 368 - -
Glsi12g2860 374 ProSitePatterns MAP kinase signature. 74 177 IPR003527 GO:0004707|GO:0005524|GO:0006468
Glsi12g2860 374 Gene3D Transferase(Phosphotransferase) domain 1 123 352 - -
Glsi12g2860 374 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 38 339 - -
Glsi12g2860 374 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Glsi12g2860 374 ProSitePatterns Protein kinases ATP-binding region signature. 45 69 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2860 Glsi-ChrGlsi12 41687136 41690139 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2860 8 370 MAP Kinase Gene Family AT2G18170 86.777 0.0 669
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Glsi12g2860 Pkinase 2.2e-69 CL0016