Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2850 ATGAGGAACCCGTCATCGTCATCCTCATCAAGAGCTGGAACGTCTTCTTCACCTCGTGGTGGTAGTGGCAGTAAGACTCCGTGCTGCAGCAAGTTAGGGCTGAAGAGAGGGCCATGGACTCCCGACGAAGACCAGCTCTTATCCAATTACATCAACAAAGAAGGCGAAGGCCGCTGGCGTACTCTCCCCAAGCGAGCTGGCCTCCTCCGCTGCGGCAAAAGCTGTCGCCTCCGCTGGATGAACTATCTCCGTCCTTCCGTCAAGCGCGGCCAGATCGCCCCCGACGAGGAGGATCTCATCCTCCGCCTCCACCGCCTCCTCGGCAACCGGTGGTCTCTGATAGCTGGCAGAATCCCTGGACGAACAGATAATGAGATTAAGAACTACTGGAACACCCATCTCAGCAAGAAACTCATCAGTCAAGGCATAGATCCAAGAACCCACAAACCTCTCAACCCTAATAATCCTAATCCCTCTCCTTCTACTACATATCATGCGAGGCCAGCTTCCAATTCATCCAAACCCACTCCTCTCCCACCTCCTCCTATACCTGATACTCCAATAACTCAAGAAAACCCTCCTACTCATCATGGGCTTCCTCTCAACGACCAAAATGACTACTTTCACCCCACTATTAATGATCATCACTTGGATCCATACCAAGCTGGGATAGCTGCAACGGATTCTGACGGTTCTGCAAAGGGCTTCAGAAGCAACAGTGTGCTTAACAATGAAGAAGAAGAAGACGATGATGATATCAATTACTGTTCCGACGATGTGTTCTCCTCTTTCCTCAATTCATTGATCAACGAGGATGCTTTTTCTGCTCAACAGCCTCCCAATGGGATTAATGGCTGGGAATCCGCACTCATGTCTTCCACCTTCACCCAGAATGATCCCAACATGGCCGATGATCATGACGACTAG 927 0.5059 MRNPSSSSSSRAGTSSSPRGGSGSKTPCCSKLGLKRGPWTPDEDQLLSNYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGQIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRTHKPLNPNNPNPSPSTTYHARPASNSSKPTPLPPPPIPDTPITQENPPTHHGLPLNDQNDYFHPTINDHHLDPYQAGIAATDSDGSAKGFRSNSVLNNEEEEDDDDINYCSDDVFSSFLNSLINEDAFSAQQPPNGINGWESALMSSTFTQNDPNMADDHDD 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2850 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 84 138 IPR017930 -
Glsi12g2850 308 MobiDBLite consensus disorder prediction 276 308 - -
Glsi12g2850 308 MobiDBLite consensus disorder prediction 158 172 - -
Glsi12g2850 308 Gene3D - 93 159 - -
Glsi12g2850 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 31 83 IPR017930 -
Glsi12g2850 308 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 25 225 - -
Glsi12g2850 308 SMART sant 35 85 IPR001005 -
Glsi12g2850 308 SMART sant 88 136 IPR001005 -
Glsi12g2850 308 FunFam transcription repressor MYB5-like 93 159 - -
Glsi12g2850 308 SUPERFAMILY Homeodomain-like 33 130 IPR009057 -
Glsi12g2850 308 CDD SANT 94 134 IPR001005 -
Glsi12g2850 308 FunFam Myb transcription factor 33 89 - -
Glsi12g2850 308 ProSiteProfiles Myb-like domain profile. 31 83 IPR001005 -
Glsi12g2850 308 MobiDBLite consensus disorder prediction 173 189 - -
Glsi12g2850 308 ProSiteProfiles Myb-like domain profile. 84 134 IPR001005 -
Glsi12g2850 308 MobiDBLite consensus disorder prediction 1 24 - -
Glsi12g2850 308 Gene3D - 33 89 - -
Glsi12g2850 308 Pfam Myb-like DNA-binding domain 36 83 IPR001005 -
Glsi12g2850 308 Pfam Myb-like DNA-binding domain 93 134 IPR001005 -
Glsi12g2850 308 CDD SANT 38 83 IPR001005 -
Glsi12g2850 308 MobiDBLite consensus disorder prediction 143 215 - -
Glsi12g2850 308 MobiDBLite consensus disorder prediction 276 300 - -
Glsi12g2850 308 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2850 Glsi-ChrGlsi12 41611314 41612345 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2850 22 271 MYB Transcription Factor Family AT3G13540 54.800 9.50e-86 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi12g2850 Myb_DNA-binding 8.7e-14 CL0123