Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2842 ATGAGAGGAAGGAGTTATAGTCCATCACCGCCAAGGGGTTATGGTAGAAGAGGAAGAAGTCCTAGCCCTAGGGGCCGTTATGGTGGCCGTGGCAGGGATCTCCCTAGCAGTCTTCTAGTTCGCAACCTTCGCCATGACTGCAGGCCTGAGGATCTTCGTAGATTGTTTGGGCAATTTGGTGCTGTTAAGGACATTTACCTTCCAAAGGATTATTACACTGGAGAACCTCGTGGCTTTGGTTTTGTCCAATTTGTAGATCCTGCTGATGCTGCAGATGCTAAGTATCATGTGGATGGTCAAATTCTTCTTGGTCGGGAGTTGACTGTTGTTTTTGCTGAGGAGAATAGAAAGAAGCCCACTGAGATGAGGGCAAGAGAACGAAGGGGGCGATTTTCTGATCGAAGAAGGTCTCCTCCTCGTTCACCTCGATACTCACGATCACCACCACGTAATAGATCTCGGTCTCGAAGTCGTGATTATTATTCCCCTCCTCCCAAACGAAAGGAATATTCAAGATCTGTGTCACCTGAAGATAGAAGATACAGTCGAGAAAGATCTTATTCACGGCAGAGTAGGGAGAGGGAGAGATCATACTCACACTATCCACCGTATAATGGTGGATCAAGGAGCCGTAGTCAGAGTCCAGCCAAGGGCCCAAGCCGGAGCCGAAGTCAGAATCGGAATCAAGATGATTATCCAAGGGAACCAGCCCGTGGTAGATCCCCCAGTCAATGA 735 0.4857 MRGRSYSPSPPRGYGRRGRSPSPRGRYGGRGRDLPSSLLVRNLRHDCRPEDLRRLFGQFGAVKDIYLPKDYYTGEPRGFGFVQFVDPADAADAKYHVDGQILLGRELTVVFAEENRKKPTEMRARERRGRFSDRRRSPPRSPRYSRSPPRNRSRSRSRDYYSPPPKRKEYSRSVSPEDRRYSRERSYSRQSRERERSYSHYPPYNGGSRSRSQSPAKGPSRSRSQNRNQDDYPREPARGRSPSQ 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2842 244 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 36 232 - -
Glsi12g2842 244 MobiDBLite consensus disorder prediction 1 33 - -
Glsi12g2842 244 MobiDBLite consensus disorder prediction 117 140 - -
Glsi12g2842 244 SUPERFAMILY RNA-binding domain, RBD 20 127 IPR035979 GO:0003676
Glsi12g2842 244 MobiDBLite consensus disorder prediction 152 199 - -
Glsi12g2842 244 Gene3D - 4 128 IPR012677 -
Glsi12g2842 244 MobiDBLite consensus disorder prediction 203 226 - -
Glsi12g2842 244 SMART rrm1_1 37 110 IPR000504 GO:0003723
Glsi12g2842 244 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
Glsi12g2842 244 MobiDBLite consensus disorder prediction 117 244 - -
Glsi12g2842 244 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 107 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2842 Glsi-ChrGlsi12 41534381 41537938 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2842 3 99 Eukaryotic Initiation Factors Gene Family AT3G11400 38.679 8.65e-10 56.2