Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2829 ATGAGTTTGCCATTTTCCGCGGCAGCAAAGCCTTTTATCATTGGAAGCTATAGCAAATCACCTAGTATAGCTCTAAGAGCGGAACTGACCATAGCTCCCAAACGAAGAAGGGAGAGCATTTCTCATCAGTTGTCAAATAAAGGAGTTTCTCTTGCTGATTTACATGTACAACAAGTTGTTGAGAGGCAGACTCAGCCTACTGAGTTTACCACTATAATTCCTTGCAGCAAACCACAGTTCCATCCCAGTTTTCTAAAGGAAGCCTATGACAGTTGCAGAAAGATCTGCGCAGAATATGCCAAGACCTTCTATCTAGGGACTTTGCTCATGACGGAAGAAAGACAAAAAGCTATATGGGCAATTTATGTTTGGTGCAGGAGGACAGATGAATTGGTTGATGGTCCTAACGCTGTGTATATGAGCTCTGCTGTTCTTGATAGGTGGGAAGTGAGACTGCATGACATTTTTAATGGACGCCCCTATGATATGCTTGATGCTGCTCTTACTGATACTCTCTCCAAGTTTGCCTTGGACATCAAGCCTTTCAGGGACATGATAGAAGGTATGAGAATGGATACAAGGAAAGCCCGGTACAAAAATTTTGAAGAACTGTATCTATACTGCTACTATGTGGCTGGAACTGTTGCCTTAATGAGTGTTCCAATAATGGGAATTGCCGCAGAGTCTCTTATCCCTGCTCAAAATGTATACAATGCAGCACTGTACTTGGGTATCGGAAATCAATTGACAAATATTCTTAGAGATGTGGGAGAGGATGCATCAAGAGGTAGAGTTTACCTTCCCGAAGATGAACTTGCCCAGTTTGGTTTAAGTGACGAGGATATTTTCTCAAGAAATATCAGTGAAAGATGGAAAGTGTTCATGAAACAGCAGATTTCAAGGGCAAGATTCTACTTCAACTTGGCAGAAGAAGGAGCTTGTCAGCTTGAGAAGGCCAGCCGTTGGCCGGTGTGGTCGTCATTAATATTGTATCGCAAGATCTTAGACGCAATCGAAGACAATGATTATGACAACTTGACAAAACGAGCCTACGTAGGACGAGCTACGAAGCTTGCGATGTTACCTCTAGCCTACACCAGGTCTCTCTCTCCAGGATCATCACGCCACAATAGCGCGCCTGCTCCTCTGCTTCCTCTTGGAAATATGCAAGTATAA 1176 0.4337 MSLPFSAAAKPFIIGSYSKSPSIALRAELTIAPKRRRESISHQLSNKGVSLADLHVQQVVERQTQPTEFTTIIPCSKPQFHPSFLKEAYDSCRKICAEYAKTFYLGTLLMTEERQKAIWAIYVWCRRTDELVDGPNAVYMSSAVLDRWEVRLHDIFNGRPYDMLDAALTDTLSKFALDIKPFRDMIEGMRMDTRKARYKNFEELYLYCYYVAGTVALMSVPIMGIAAESLIPAQNVYNAALYLGIGNQLTNILRDVGEDASRGRVYLPEDELAQFGLSDEDIFSRNISERWKVFMKQQISRARFYFNLAEEGACQLEKASRWPVWSSLILYRKILDAIEDNDYDNLTKRAYVGRATKLAMLPLAYTRSLSPGSSRHNSAPAPLLPLGNMQV 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2829 391 FunFam Phytoene synthase chloroplastic 81 363 - -
Glsi12g2829 391 Gene3D Farnesyl Diphosphate Synthase 82 364 IPR008949 -
Glsi12g2829 391 SFLD Phytoene synthase like 86 367 IPR044843 GO:0004311
Glsi12g2829 391 ProSitePatterns Squalene and phytoene synthases signature 2. 243 268 IPR019845 GO:0016765
Glsi12g2829 391 PANTHER BIFUNCTIONAL LYCOPENE CYCLASE/PHYTOENE SYNTHASE 38 370 - -
Glsi12g2829 391 SUPERFAMILY Terpenoid synthases 88 369 IPR008949 -
Glsi12g2829 391 MobiDBLite consensus disorder prediction 369 391 - -
Glsi12g2829 391 CDD Trans_IPPS_HH 90 357 IPR033904 GO:0004311
Glsi12g2829 391 SFLD Isoprenoid Synthase Type I 86 367 - -
Glsi12g2829 391 Pfam Squalene/phytoene synthase 99 354 IPR002060 GO:0009058
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2829 Glsi-ChrGlsi12 41450196 41452905 Dispersed/Transposed