Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2825 ATGCGAACTTCATGGGCAGATTTGGCTGCAAACTCCGCAGCTGATAATGCAGGTCCTGGTTCTTCTGCTAACAATGCAGGAACTGGTAACACTTCGGCTCCTTCACGCCCAGTCTATGTTCCTCCGCATCTTAGGAACCGTCCACCTTCTGCAGAATCCCCTGCTCCAGCATATAGTGCCCCTACTTCTGGTTCTGGTTCCGGTTCCGGTACTGGCAATGCTGGATCACGTTATGCTCCGCCCAGAAATGAGAATCGTCCCGGGTATGGTGGCGGTGGCCGCACAAGTGGATGGGGAAACAGAGGAAGTGGCTGGGATCGTGGCAGAGAGCGAGAAGTCAATCCCTTTGACAATGAGGATGAACCAGAAGAGGCATTTAATGAGCAGGAGAATACGGGAATAAACTTCGACGCATATGAAGACATTCCTGTGGAGACCAGCGGTGATAATGTGCCACCTGCAGTGAATACATTTGCAGAGATTGACTTGGGTGAAGCACTTAATCAAAATATAAGAAGGTGCAAATATGTGAAGCCAACACCTGTTCAGCGACATGCCATACCAATATCCCTTGGTGGAAGGGATTTGATGGCTTGTGCGCAGACTGGTTCTGGAAAGACTGCTGCTTTTTGCTTTCCAATTATCAGTGGAATTATGAGGGGCCAACCCGTACAGAGGCCACCTCGGGGGGTGCGTACAGTATATCCACTTGCCCTTGTTCTCTCACCAACAAGGGAGCTATCAATGCAAATTCATGAAGAAGCTAAGAAGTTTTCATACCAAACAGGGGTTAGGGTGGTTGTTGCTTATGGTGGTGCACCAATAAACCAGCAGCTGCGAGATCTTGAGAGAGGGGTTGACATTCTTGTTGCAACTCCTGGAAGATTAGTGGATTTGCTGGAGAGGGCTAGAGTTTCACTGCAGATGATCAGATATTTGGCCTTAGATGAGGCAGATCGGATGCTGGATATGGGTTTTGAGCCTCAAATAAGGAAGATTGTAGAACAGATGGACATGCCTCCAGCGGGTGCCAGACAGACTATGCTGTTCAGTGCTACTTTTCCAAAAGAGATACAGAGATTGGCCTCTGATTTTCTTTCAAATTATATTTTCCTGGCTGTTGGAAGAGTGGGCTCAAGTACTGATTTGATTGTCCAAAGAGTTGAATATGTTCAGGAGTCTGACAAGAGAAGTCACCTCATGGACCTTCTCCATGCACAGAGGGCGAATGGTGTACAAGGAAAGCAAGCATTAACATTAGTTTTTGTGGAGACAAAGAAGGGAGCTGATTCACTGGAACACTGGCTTTGTCTTAATGGTTTTCCAGCAACCACTATTCACGGGGACAGGACACAACAGGAAAGAGAACTGGCATTAAGGTCATTTAAAAGTGGCAACACCCCCATATTGGTCGCCACTGATGTGGCTGCACGTGGTCTTGATATCCCTCATGTTGCCCATGTTGTCAACTTTGATCTGCCAAATGATATCGATGATTATGTACATCGAATTGGAAGGACGGGACGAGCAGGAAAGAAGGGTCTGGCCACTGCATTCTTTAATGACAACAATGCATCACTAGCAAGGGCTTTAGCAGATCTGATGCAAGAAGCAAATCAAGAAGTGCCTGCTTGGCTTTCCCGGTATGCTGCTCGATCTTCTTTTGGAGGAAGAAACCGTCGATCAGGCGGAGGCCGGTTTGGTGGCCGTGACTTCCGAAGAGAGGGCTCTATCAGTAGGGGTGGTTCTGATTATTACAGTGCAGGAAATAGCAGTGGCGGGTATGGGGCGTCTGGTGGGTATGCTGGAGGGTATGCTGGAGGGTATGGTCCTGGTGTCACCAGCGCATGGGACTGA 1857 0.4836 MRTSWADLAANSAADNAGPGSSANNAGTGNTSAPSRPVYVPPHLRNRPPSAESPAPAYSAPTSGSGSGSGTGNAGSRYAPPRNENRPGYGGGGRTSGWGNRGSGWDRGREREVNPFDNEDEPEEAFNEQENTGINFDAYEDIPVETSGDNVPPAVNTFAEIDLGEALNQNIRRCKYVKPTPVQRHAIPISLGGRDLMACAQTGSGKTAAFCFPIISGIMRGQPVQRPPRGVRTVYPLALVLSPTRELSMQIHEEAKKFSYQTGVRVVVAYGGAPINQQLRDLERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPAGARQTMLFSATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADSLEHWLCLNGFPATTIHGDRTQQERELALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNDNNASLARALADLMQEANQEVPAWLSRYAARSSFGGRNRRSGGGRFGGRDFRREGSISRGGSDYYSAGNSSGGYGASGGYAGGYAGGYGPGVTSAWD 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2825 618 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 156 184 IPR014014 GO:0003724
Glsi12g2825 618 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 126 550 - -
Glsi12g2825 618 MobiDBLite consensus disorder prediction 1 133 - -
Glsi12g2825 618 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 187 372 IPR014001 -
Glsi12g2825 618 Pfam Helicase conserved C-terminal domain 396 511 IPR001650 -
Glsi12g2825 618 Pfam DEAD/DEAH box helicase 180 361 IPR011545 GO:0003676|GO:0005524
Glsi12g2825 618 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 237 529 IPR027417 -
Glsi12g2825 618 Gene3D - 111 374 IPR027417 -
Glsi12g2825 618 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 383 550 IPR001650 -
Glsi12g2825 618 FunFam ATP-dependent RNA helicase RhlB 375 554 - -
Glsi12g2825 618 CDD DEADc_DDX3_DDX4 157 378 IPR044763 GO:0003724|GO:0005524
Glsi12g2825 618 CDD SF2_C_DEAD 384 520 - -
Glsi12g2825 618 SMART helicmild6 430 511 IPR001650 -
Glsi12g2825 618 MobiDBLite consensus disorder prediction 56 78 - -
Glsi12g2825 618 FunFam Probable ATP-dependent RNA helicase DDX4 118 374 - -
Glsi12g2825 618 SMART ultradead3 175 387 IPR014001 -
Glsi12g2825 618 Gene3D - 375 554 IPR027417 -
Glsi12g2825 618 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2825 Glsi-ChrGlsi12 41414824 41422520 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2825 140 543 Eukaryotic Initiation Factors Gene Family AT3G19760 31.852 1.24e-61 208