Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2821 ATGGCTTCCAATAGGGCTTCCGATCTGGCATTGATTTGCACCTCCCTGCTTCTGCTGGCTGGTTTTGCACTCTCCGATTTAGCCAAAGACAGAGAAGAATGTGCTGATCAACTCGTTGGCCTTGCTCCTTGTCTTCCTTACGTTGGCGGCGAAGCCCCGTCCCCTACCATAGATTGCTGCACTGGCCTTAAACAGGTTATTGATAAAAGCAAGAAATGCATCTGTATCCTCATCAAAGATCGCAACGACCCCAACCTCGGCGTCAAGATCAATGCTTCTCTCGCCGTTCACCTTCCGTCTACTTGTCACACGCCGGCTAACATTTCTGAGTGCGTCAATCTTTTGCATTTGGCGCCTCATTCTCCAGAGGCTAAGGTATTCGAGGGATTTGATGAGGCCACTAAAACTAACGGTTCCACCCCTGCTCCTGCCACTGCAAATAATAGTACTGGCAAGGGATCGAGCCCAATCGCTGACGTGAAGAGTGATGGTGGGCGTGGGTGGGGAAAGAGGTGGCTGGTGGCAGAGGTGGTTTGTGTGATTTTACCTTTTGTTCTCATATCACACTCCGTCTTCCTCCTTTGA 585 0.5043 MASNRASDLALICTSLLLLAGFALSDLAKDREECADQLVGLAPCLPYVGGEAPSPTIDCCTGLKQVIDKSKKCICILIKDRNDPNLGVKINASLAVHLPSTCHTPANISECVNLLHLAPHSPEAKVFEGFDEATKTNGSTPAPATANNSTGKGSSPIADVKSDGGRGWGKRWLVAEVVCVILPFVLISHSVFLL 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2821 194 PRINTS Plant phospholipid transfer protein signature 33 49 IPR000528 GO:0006869|GO:0008289
Glsi12g2821 194 PRINTS Plant phospholipid transfer protein signature 89 106 IPR000528 GO:0006869|GO:0008289
Glsi12g2821 194 PRINTS Plant phospholipid transfer protein signature 54 68 IPR000528 GO:0006869|GO:0008289
Glsi12g2821 194 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 19 149 IPR043325 -
Glsi12g2821 194 FunFam Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 31 111 - -
Glsi12g2821 194 Pfam Probable lipid transfer 26 111 IPR016140 -
Glsi12g2821 194 MobiDBLite consensus disorder prediction 134 160 - -
Glsi12g2821 194 SMART aai_6 34 111 IPR016140 -
Glsi12g2821 194 MobiDBLite consensus disorder prediction 134 156 - -
Glsi12g2821 194 Gene3D - 31 111 IPR036312 -
Glsi12g2821 194 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 33 113 IPR036312 -
Glsi12g2821 194 CDD AAI_LTSS 41 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2821 Glsi-ChrGlsi12 41382598 41383377 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2821 3 182 Acyl Lipid Metabolism Gene Families AT1G55260 47.514 7.73e-51 162