Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2801 ATGTCTGGACCCAATTGGCAGACGAATAGGATAACTTGTTATTGTGTTGGGGAATGAGAGAAACGTACAGAGGACTCTGGAATTGAAGGGGTTTTGAGGTTAGTGCAAGAATTGCTCTGGCTTGCGAGCTTCGCATCAATGGCTGGCGTATCTCTCCAGTGCGGAGACTGCGGGGCGCTATTGAGGTCCGTACAAGAAGCCCAGGAACACGCAGAGCTCACCTCCCACTCCAACTTCTCCGAATCGACTGAAGCTGTTCTCAACCTTGTTTGCACCACTTGTGGCAAGCCGTGCCGATCCAAAACCGAGAGTGATTTGCATACAAAAAGAACTGGGCATGCTGAATTTGTTGATAAGACATCTGAGGTGGCAAAACCAATAAGTTTGGAGGTTCCAAAGGTGGATGCGATGTCAGATGAGGCTGTCAATGCTACTGCTGACCAGCCTGAAGAAATGGTTGCTCCGGAGGTTGACAAAAAGCTGCTTGAGGAACTTGAATCAATGGGGTTTTCAACAGCACGAGCAACACGTGCACTTCATTATTCTGGTAATGCTAGCCTTGAGGCTGCAGTAAATTGGGTAGTAGAGCATGAGAATGATCCCGACATAGATCAGATGCCCTTGGTACCTGCCAACAGCCAAGTTGAGGCTTCTAAGCCCTCTCTCACACCAGAACAATTGAAGGCTAAGCAACAGGAACTAAGGGAGAGGGCTCGCAAGAAGAAAGAAGAGGAAGAAAAGAGAATGGAAAGAGAAAGAGAAAAGGAGAGAATTCGTATAGGCAAGGAGCTACTGGAAGCAAAGAGGATTGAAGAAGAGAATGAGAGAAAACGGTTGTTGGCTCTGCGAAAAGCAGAGAAAGAGGAAGAGAGAAAGGCTAGAGAGAAAATCAAGCAGAAATTGGAAGAAGACAAGGCAGAAAGAAGGCGAAGACTTGGATTGCCTCCAGAAGAACCTTCAGCTGCTAGACCTTCAACTGTTGTGGAGGAGAAAAAGAGTTCATTGCCAGTTCGGCCTGCCACAAAAACTGAGCAAATGAGAGAGTGCTTGCGATCTCTCAAGCAGAATCACAAGGAAGATGATGCTAGAGTAAAGAGAGCATTCCAGACTCTTCTAACTTATGTGGGGAATGTTGCCAGAAATCCTGACGAAGAAAAATATAGAAAAATAAGACTTAGTAACCAATCTTTTCAGGAAAGAATTGGTGCCTTGAAAGGGGGAATTGACTTCCTGGAAATTTGTGGGTTTGAGAAAATCGATGGTGGTGAGTTCTTGTTTTTGCCAAGGGACAAGGTTGACATGGCAGTCCTGAATTCTGCTGGGTCTGAACTGGACTCTGCGATAAAGAATCCCTTTTTTGGAGTTCTTTAG 1371 0.4581 MSGPNWQTNRITCYCVGEXEKRTEDSGIEGVLRLVQELLWLASFASMAGVSLQCGDCGALLRSVQEAQEHAELTSHSNFSESTEAVLNLVCTTCGKPCRSKTESDLHTKRTGHAEFVDKTSEVAKPISLEVPKVDAMSDEAVNATADQPEEMVAPEVDKKLLEELESMGFSTARATRALHYSGNASLEAAVNWVVEHENDPDIDQMPLVPANSQVEASKPSLTPEQLKAKQQELRERARKKKEEEEKRMEREREKERIRIGKELLEAKRIEEENERKRLLALRKAEKEEERKAREKIKQKLEEDKAERRRRLGLPPEEPSAARPSTVVEEKKSSLPVRPATKTEQMRECLRSLKQNHKEDDARVKRAFQTLLTYVGNVARNPDEEKYRKIRLSNQSFQERIGALKGGIDFLEICGFEKIDGGEFLFLPRDKVDMAVLNSAGSELDSAIKNPFFGVL 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2801 456 Pfam PUB domain 363 433 IPR018997 -
Glsi12g2801 456 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 156 197 IPR015940 -
Glsi12g2801 456 MobiDBLite consensus disorder prediction 212 242 - -
Glsi12g2801 456 SMART uba_6 158 196 IPR015940 -
Glsi12g2801 456 PANTHER F13M7.16 PROTEIN 47 456 - -
Glsi12g2801 456 Pfam UBA/TS-N domain 162 193 IPR015940 -
Glsi12g2801 456 CDD UBA_PUB_plant 156 204 - -
Glsi12g2801 456 MobiDBLite consensus disorder prediction 297 316 - -
Glsi12g2801 456 Coils Coil 227 259 - -
Glsi12g2801 456 Gene3D - 158 204 - -
Glsi12g2801 456 Gene3D - 348 446 - -
Glsi12g2801 456 MobiDBLite consensus disorder prediction 212 228 - -
Glsi12g2801 456 SMART PGNneu 366 429 - -
Glsi12g2801 456 CDD PUB_UBA_plant 350 456 - -
Glsi12g2801 456 ProSitePatterns Zinc finger C2H2 type domain signature. 54 76 IPR013087 -
Glsi12g2801 456 MobiDBLite consensus disorder prediction 297 335 - -
Glsi12g2801 456 Coils Coil 262 307 - -
Glsi12g2801 456 SUPERFAMILY UBA-like 142 210 IPR009060 GO:0005515
Glsi12g2801 456 SUPERFAMILY PUG domain-like 341 452 IPR036339 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2801 Glsi-ChrGlsi12 41197455 41208075 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2801 139 456 C2H2 Transcription Factor Family AT1G04850 78.193 5.52e-155 441