Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2793 ATGAGCTCGACTCTTGAGATTGTATCGAAACTTTCGGAGCACACCGAGGAAACAAAGAGAAGAGTGACATTCCCAGTAGAGATGCGCTGCTGTGGCTATGGATTAACTGTCCCGGGAAGCGATTATCGCTTCTTCTACCTTCCCTCCGCTAAACCCATATCTCTCTCCCCTAACTCTTACAAGCCCCTCAATTTCCCTTCTCGAACCGATTTCTGTTCCCTCAGAGTTAAAGCCGCCGTTAACGATAGTTACGTCGATAGTTATGTCGCTGAGGCCACTGAGGTGAGCTTCTATGAGCTTCTGGGTATACCCGAATCTGTATCCTTGCCCGAGATCAAGCAGGCTTACAAGCAGCTCGCCCGCAAGTACCACCCGGATGTGTCGCCTCCGGATCGGGTCGAGGAGTATACTAGAAGGTTTATTCTGGTGCAGGAGGCCTATGAGACATTGTCTGATCCTAGAAGGAGAGCCATGTATGATAAAGACATGGCCAGGGGGATTCACTTGGCTTTCTCCGCCCGCCGACGGTCCTACGACGATGAGGTAATTGAACAGAGAAGTGAATGGAAAACTCGTTGGCAATCTCAACTATCAGAGCTGAAGAAAAGAAGTAAGTTCAAGGATGCTGGAGAAAAAATGTCATGGGCAGCTCAAATGCGCCAGCGAAGGGAAGAATGA 678 0.4941 MSSTLEIVSKLSEHTEETKRRVTFPVEMRCCGYGLTVPGSDYRFFYLPSAKPISLSPNSYKPLNFPSRTDFCSLRVKAAVNDSYVDSYVAEATEVSFYELLGIPESVSLPEIKQAYKQLARKYHPDVSPPDRVEEYTRRFILVQEAYETLSDPRRRAMYDKDMARGIHLAFSARRRSYDDEVIEQRSEWKTRWQSQLSELKKRSKFKDAGEKMSWAAQMRQRREE 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2793 225 ProSitePatterns Nt-dnaJ domain signature. 140 159 IPR018253 -
Glsi12g2793 225 Gene3D DnaJ domain 85 200 IPR036869 -
Glsi12g2793 225 SMART dnaj_3 95 155 IPR001623 -
Glsi12g2793 225 MobiDBLite consensus disorder prediction 204 225 - -
Glsi12g2793 225 Pfam DnaJ domain 97 160 IPR001623 -
Glsi12g2793 225 FunFam Chaperone protein dnaJ 20, chloroplastic 82 191 - -
Glsi12g2793 225 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 75 224 - -
Glsi12g2793 225 CDD DnaJ 97 152 IPR001623 -
Glsi12g2793 225 PRINTS DnaJ domain signature 98 116 IPR001623 -
Glsi12g2793 225 PRINTS DnaJ domain signature 116 131 IPR001623 -
Glsi12g2793 225 PRINTS DnaJ domain signature 135 155 IPR001623 -
Glsi12g2793 225 PRINTS DnaJ domain signature 155 174 IPR001623 -
Glsi12g2793 225 SUPERFAMILY Chaperone J-domain 94 166 IPR036869 -
Glsi12g2793 225 ProSiteProfiles dnaJ domain profile. 96 163 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2793 Glsi-ChrGlsi12 41112158 41115430 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2793 98 160 C2H2 Transcription Factor Family AT1G74250 43.939 4.71e-07 48.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi12g2793 12 41112158 41115430 Glsi12g2793 12 41112158 41115430 ECH