Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2789 ATGGAGGTGCCATGGCAGAATTTGTTGTCTGATTCGGATGTGGATGATAGCGTTATCTATCAATGCCAAGGGAACTCATTTGATGAGCAAGAGTTCCTGAGGGAGATCCTTCACCATCCTTCCTTATCTTCTGAAAGTGAAAGTTACGATTGCCCTACTGTTCAAGAAAATTCCATCTCTAAACTTGCTTCTTCTGATAAGAATGCCTTATCCTCATCGTCTCCGTCAACTTATATTTTGTCTTTCGATAATTCAACTTTGATGCCAGCTGCTACCCACCACGATGTTACCTTATCCGCAGAGCTGGCCCTGGAGAACCGTAAAAGTACTCTCACTGATCAACCAAAGGCCAATCAACGATCAAAGAGGGCTAGAAGTTCCGCCGAGGCACTAGATCACATAACGGCCGAGAGAAATAGGAGACTGCATCTCAAAGAGAACTTCATAGCACTTGCAGCAACTATTCCTGGTTTGAAGAAGATTGACAAGGCGTCTATACTTAGCGAAGCTGTCAAACACGTGAAACAGCTTCAAGAACGTGTAAAAGAGTTAGAGCAACAAAGCAAGAAGACAACTAGTGTTGTTGCAGACACAACCTCTAATTGCTGTGAATCTCATGATTGCTATAGACTTAATGAAGCACTCCCCGAAGTTGAAGCAAGACTCTTGCACAAACAAATACGCATCAGAATTCACTGTGAGAAACAACCAGGCATTATGCTCAAAATATTTTCCCTCCTTCAAACACTTCATTTGTCTATAATCAGTAATACCGTCTTCCCTTTCGGGAATTCCACTCTTGACATTACCATTTTTGCTGAGGTTGGTGACAAATGCAATATAGCAGTGAAGGAACTAGTGAAAAAGCTGAGACTGGCTATGTTGAAGTCAACTCGCATTCAAGAGTGA 909 0.4224 MEVPWQNLLSDSDVDDSVIYQCQGNSFDEQEFLREILHHPSLSSESESYDCPTVQENSISKLASSDKNALSSSSPSTYILSFDNSTLMPAATHHDVTLSAELALENRKSTLTDQPKANQRSKRARSSAEALDHITAERNRRLHLKENFIALAATIPGLKKIDKASILSEAVKHVKQLQERVKELEQQSKKTTSVVADTTSNCCESHDCYRLNEALPEVEARLLHKQIRIRIHCEKQPGIMLKIFSLLQTLHLSIISNTVFPFGNSTLDITIFAEVGDKCNIAVKELVKKLRLAMLKSTRIQE 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2789 302 Gene3D - 114 193 IPR036638 GO:0046983
Glsi12g2789 302 Coils Coil 167 194 - -
Glsi12g2789 302 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 128 177 IPR011598 GO:0046983
Glsi12g2789 302 ProSiteProfiles ACT domain profile. 228 302 IPR002912 -
Glsi12g2789 302 PANTHER BHLH TRANSCRIPTION FACTOR 38 296 - -
Glsi12g2789 302 Pfam Helix-loop-helix DNA-binding domain 133 178 IPR011598 GO:0046983
Glsi12g2789 302 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 133 190 IPR036638 GO:0046983
Glsi12g2789 302 MobiDBLite consensus disorder prediction 108 129 - -
Glsi12g2789 302 CDD ACT 229 286 - -
Glsi12g2789 302 SMART finulus 134 183 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2789 Glsi-ChrGlsi12 41088058 41089441 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2789 106 294 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 40.887 2.61e-37 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi12g2789 HLH 1.1e-07 No_clan