Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2785 ATGTGGGTTGGTTACCGCTGTGTTTCCAGGTGGCACCACCCCATCCTACTGCATCATCTCTTAAACCCTAGCCGCTTCCTTCTCTGCGTCTCTAATTACCAAATCAAACCTTTCGCCTCTTCCTCTGAGGCCATAATCATCAAAATGGCACTGAGAAATAAACTCGGTAATCTTTTGAGACAGAGTGTTACTCAGAACAGACAAGTACCAGTTGCATCAATGCTGAATTATGTACGCTGCATGTCATCATCCAAGCTTTTCATTGGAGGCCTTTCATATGGAGTTGATGACCAGTCTCTCAGGGATGCATTTGCTAGCTTTGGAGATGTGGTCGAGGCAAGGGTTATTACTGATAGAGACACTGGAAGGTCAAGGGGATTTGGATTTGTCAATTTCTCTAGTGATGATTCAGCAACTTCAGCAATGTCTGCGATGGATGGGCAGGAGCTAAATGGGCGAAGCATTCGGGTGAGTTATGCAAATGATAGACCATCTGGACCTCGATCTTATGGTGGCGGCGGCGGCGGCGGTTATGGTGGCGGCGGCGGCGGCGGTTATGGAAGGGATGGAGGTTTTGATAATCCATCCTTTTAA 594 0.4764 MWVGYRCVSRWHHPILLHHLLNPSRFLLCVSNYQIKPFASSSEAIIIKMALRNKLGNLLRQSVTQNRQVPVASMLNYVRCMSSSKLFIGGLSYGVDDQSLRDAFASFGDVVEARVITDRDTGRSRGFGFVNFSSDDSATSAMSAMDGQELNGRSIRVSYANDRPSGPRSYGGGGGGGYGGGGGGGYGRDGGFDNPSF 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2785 197 MobiDBLite consensus disorder prediction 160 197 - -
Glsi12g2785 197 CDD RRM2_NsCP33_like 85 160 - -
Glsi12g2785 197 SUPERFAMILY RNA-binding domain, RBD 76 191 IPR035979 GO:0003676
Glsi12g2785 197 Gene3D - 65 194 IPR012677 -
Glsi12g2785 197 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 84 162 IPR000504 GO:0003723
Glsi12g2785 197 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 61 187 - -
Glsi12g2785 197 SMART rrm1_1 85 158 IPR000504 GO:0003723
Glsi12g2785 197 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 86 156 IPR000504 GO:0003723
Glsi12g2785 197 FunFam Glycine-rich RNA-binding protein 2 73 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2785 Glsi-ChrGlsi12 41052132 41055841 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2785 83 169 Eukaryotic Initiation Factors Gene Family AT1G49760 39.080 1.81e-13 66.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi12g2785 12 41052132 41055841 Glsi12g2785 12 41052132 41055841 ECH