Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2769 ATGCCAAAACTGGGTCGGCAGCGTACGGTGGAGACGAAGTTGAAGTCAACTCTCTCTCATCTTTGTTTCTCTCTCTCTCTAACCGAATCAGTCTTGGGATCTGACGTCGTTGTTGTCCAGCTTTTACTCATTCTCCGCCTCCATCTCCCTCCCGCACACCTCTCCAAGTCTTCCTTCAGAAGAAGTAGAGGGGTTCCAGAAAGATCTACTCGGATTCTTCCCGATATGGACGGAGCGCCACCTTCATCCGCCGGCGCTGGAGGCGGCGGGACTGGAGGCCCGGCACCTTTCCTCATCAAGACCTACGACATGGTGCACGATTCTTCCACCGATGATATTGTGTCTTGGAGCTCCGCCAACAACAGCTTCGTCGTCTGGAACCCGCCCGAGTTCGCTCGTCTTCTCCTTCCTACCTATTTCAAGCACAACAACTTCTCCAGCTTTATCCGCCAGCTCAATACCTATGGATTTCGAAAAATACATCCTGAGCGGTGGGAGTTTGCTAATGATGATTTTGTGAAAGATCAAAAGCATCTTCTCAAGAATATTCATCGCAGGAAACCTATCCACAGTCACAGCCATCCTCCAGGCTCTCTTGTGGATCCAGAACGGACAGCGTTTGAGGAAGAAATAGATAAACTTTCACGTGAGAAAACTGCTCTTGAATCTAAGATTTATAGCTTTAAACAACACCACTCAGCTGCAAAGCCTCAGTTGGAAGATCTACTGCAGCGATTAGATGGTATGGAGAAGAGGCAGAAAAATTTGCTGAACATCTTTGAAAAGGCTCTTCACAGTCCTACTTTTGTTGAACAGCTATCACAGAAATTTGAGTGCATGGATTTATCAGCATATAATAAGAAAAGACGATTGCCTCAGGTTGATCACTCGCAGCCAGTGGCTGAAGGTAGCTTTGTTGAAAATCATAGCAATTTTAGAACAGAATTTGGACATGTCTTCCACCAAGATTTCTCAAATAAACTCAGACTGGAGTTATCACCAGCTGTCTCAGATATGAATTTGGTATCACGTAGCACACAGAGTTCAAATGAAGAAGCGGAAAATCCACATAAGAAGCTATCTGAAGGAACACCAAAAGGAGTGCAGACAAGAACAGCTAATGCATTTGTACCTGAAACGTTAGAGCTTGCAGATACTGGAGCATCTTTTACTTTCAAAATGGATTCATGCCTATCACAAAGAGCAACAACTGCTGAGAGCACAAAACTGCACTCTTTGCAGCTAAGTAATGAAGAAGGTGATAGTCATATATCCTGCCATCTAAATTTAACTCTGGCATCTTCTCCTTTGCAAGTCAACAAAAATTCATACTCAGCTAGATCACCCCAAATTGACTGTCAGGAGATTGGCAAATTGGCAGAATCAAGATTTTATGACAATGATAAAGATTCTAATAGTGGATTTCCTTCGAACAGAAATCCAGCTAATGAGGTTACCAATTTAGCTTCCTCACAAGAGACTCCAAGTAACAACCAAGTTCCCCCAGCTGCTCCAGTTAGAGTGAATGATGTGTTTTGGGAACAGTTCCTTACTGAAAGACCAGGCTGTTCAGACAATGAAGAGGCAATATCCAACTACAGAGCAAATCCATATGACGATCAAGATGAAGGGCGGTCGATGCATGGAATCTCTAGAAATGTTAAGAATATGGATCAGCTTACACTTTGA 1689 0.4381 MPKLGRQRTVETKLKSTLSHLCFSLSLTESVLGSDVVVVQLLLILRLHLPPAHLSKSSFRRSRGVPERSTRILPDMDGAPPSSAGAGGGGTGGPAPFLIKTYDMVHDSSTDDIVSWSSANNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIHPERWEFANDDFVKDQKHLLKNIHRRKPIHSHSHPPGSLVDPERTAFEEEIDKLSREKTALESKIYSFKQHHSAAKPQLEDLLQRLDGMEKRQKNLLNIFEKALHSPTFVEQLSQKFECMDLSAYNKKRRLPQVDHSQPVAEGSFVENHSNFRTEFGHVFHQDFSNKLRLELSPAVSDMNLVSRSTQSSNEEAENPHKKLSEGTPKGVQTRTANAFVPETLELADTGASFTFKMDSCLSQRATTAESTKLHSLQLSNEEGDSHISCHLNLTLASSPLQVNKNSYSARSPQIDCQEIGKLAESRFYDNDKDSNSGFPSNRNPANEVTNLASSQETPSNNQVPPAAPVRVNDVFWEQFLTERPGCSDNEEAISNYRANPYDDQDEGRSMHGISRNVKNMDQLTL 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2769 562 SUPERFAMILY "Winged helix" DNA-binding domain 93 186 IPR036390 -
Glsi12g2769 562 MobiDBLite consensus disorder prediction 469 484 - -
Glsi12g2769 562 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 88 351 IPR027725 -
Glsi12g2769 562 PRINTS Heat shock factor (HSF) domain signature 97 120 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi12g2769 562 PRINTS Heat shock factor (HSF) domain signature 135 147 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi12g2769 562 PRINTS Heat shock factor (HSF) domain signature 148 160 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi12g2769 562 FunFam Heat shock transcription factor 1 90 187 - -
Glsi12g2769 562 Coils Coil 239 259 - -
Glsi12g2769 562 MobiDBLite consensus disorder prediction 57 90 - -
Glsi12g2769 562 MobiDBLite consensus disorder prediction 535 562 - -
Glsi12g2769 562 Pfam HSF-type DNA-binding 97 186 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi12g2769 562 ProSitePatterns HSF-type DNA-binding domain signature. 136 160 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi12g2769 562 Coils Coil 204 224 - -
Glsi12g2769 562 Gene3D - 92 187 IPR036388 -
Glsi12g2769 562 MobiDBLite consensus disorder prediction 465 484 - -
Glsi12g2769 562 MobiDBLite consensus disorder prediction 341 369 - -
Glsi12g2769 562 SMART hsfneu3 93 186 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2769 Glsi-ChrGlsi12 40943830 40947970 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2769 97 562 HSF AT4G13980 55.839 2.33e-168 484
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Glsi12g2769 HSF_DNA-bind 4.2e-31 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi12g2769 12 40943830 40947970 Glsi12g2769 12 40943830 40947970 ECH