Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2768 ATGCAATTCTCAAAGAATATGCAGGGCCTTTTTGCTATCCTTTTCATATGTTTTGCTGCTTCACCTTGTTTATATGCTAGAATAACTCCTCATGCTAATCCTAGTTTCAATGTAGTTAACTATGGTGCTTCAGGGAATGGTCAAACTGATGATTCACAAGCATTTCTCAAAGCATGGAAGGATGTTTGTAATGCAACTCAGGGAACTCCAACCATCTTCATACCGAAAGGGAAAACTTTCTTGTTGCAGCCTGTGGCTTTCCAGGGTCCTTGCAAGCCGGCAACCATTAATTTTCGGATTCAAGGAAATATAACTGCCCCAAGAAGCTTCAATGCTTGGAAATGGCCAGATAATGATAAAGGCGCATGGATCCGATTCTACTACATAAATGGCCTTGTCGTCAATGGAGGGGGTGTTATTGATGGCCAAGGTGCTTCATGGTGGGACTGTTTTACTAAAAGCAAATGTCAAAGGCCAGCTGCATTGTATTTCCATAGCTGTGAAAATCTGCGACTTAGCAGCCTAACTGAGATAAACACCCCAGGAAATCATATAAGCTTAAACGACTGCCATGGCTCACGCGTCTCCAATCTCCACCTTATTGCACCTGGTCATAGCCCAAACACTGATGGGATTGACATCGCATCATCATCCAACGTTGTCATTCAAAATTCTAGAATGGAAACTGGTGATGATTGCATTGCCATTAATGGAGGTTCATCCTTCATCAACATTAGCGGTATTTCTTGTGGACCTGGTCATGGCATAAGCATTGGAAGCCTGGGAGGAAATGGAGCTTATGACACAGTGGAAGAGATTCATGTGCTAAATTGTACCTTCACAAGAACCTCAAATGGAGCAAGAATCAAGACATGGGAGGGAGGATCTGGGTATGCCAGAAAGATCACATTTGAGAATATCACACTGGTAGCAGCTCAAAACCCAGTAATAATTGACCAGTACTATAGTTCTCATTTTGCAACGGATGCCCAAAAAGCGGTGCGAGTTAGTGACATTACTTACAGGAATGTGAGAGGAACCTCAGCTGTCGGGGAAGCAATCCAACTGAAATGTGACAAAGGCATAGGCTGCACCAACATTGTGTTGGATCAGATTGACATAAATTCTTCTGTGGCTGGGACAAAGACTTATGCAACCTGCATAAATGCATATGGCACAAGTTCTTCATCCAATCCAAGCGTTCCATGCCTTTCAAAAGTGACCACCTTTTTATGA 1236 0.4288 MQFSKNMQGLFAILFICFAASPCLYARITPHANPSFNVVNYGASGNGQTDDSQAFLKAWKDVCNATQGTPTIFIPKGKTFLLQPVAFQGPCKPATINFRIQGNITAPRSFNAWKWPDNDKGAWIRFYYINGLVVNGGGVIDGQGASWWDCFTKSKCQRPAALYFHSCENLRLSSLTEINTPGNHISLNDCHGSRVSNLHLIAPGHSPNTDGIDIASSSNVVIQNSRMETGDDCIAINGGSSFINISGISCGPGHGISIGSLGGNGAYDTVEEIHVLNCTFTRTSNGARIKTWEGGSGYARKITFENITLVAAQNPVIIDQYYSSHFATDAQKAVRVSDITYRNVRGTSAVGEAIQLKCDKGIGCTNIVLDQIDINSSVAGTKTYATCINAYGTSSSSNPSVPCLSKVTTFL 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2768 411 Pfam Glycosyl hydrolases family 28 70 391 IPR000743 GO:0004650|GO:0005975
Glsi12g2768 411 SMART pbh1 190 216 IPR006626 -
Glsi12g2768 411 SMART pbh1 270 291 IPR006626 -
Glsi12g2768 411 SMART pbh1 217 238 IPR006626 -
Glsi12g2768 411 SMART pbh1 299 320 IPR006626 -
Glsi12g2768 411 SMART pbh1 336 358 IPR006626 -
Glsi12g2768 411 ProSitePatterns Polygalacturonase active site. 247 260 IPR000743 GO:0004650|GO:0005975
Glsi12g2768 411 Gene3D - 24 409 IPR012334 -
Glsi12g2768 411 PANTHER - 35 393 - -
Glsi12g2768 411 SUPERFAMILY Pectin lyase-like 25 406 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2768 Glsi-ChrGlsi12 40937535 40939574 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2768 10 404 Glycoside Hydrolase AT5G17200 45.346 2.53e-122 359