Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2756 ATGGGTCAGCTGAAACTAAAAACCCTAGTTTCTCTCTCTATACTCATCTTCTCTCTCCTCTCCTCCGCCATTGCCGACGATGCATCTGTCATGTCCAATCTCAACAAAGCCATCTCCCCAACTCTCTCGGGTTGGTCTGAGAAGACCTCTTTTTGCGACTGGGACGGCGTCAAATGTGACAACTCCGGCCGCGTCACCTCCATCAACCTAGCTTCCCAGTCACTTTCTGGTACTCTCCCTTCTGATCTCAATTCCCTCTCTCAGCTTACTACCCTCTCCCTTCAGAAGAATGCTTTCTCAGGCCCTTTGCCCTCTTTGGCAAAACTCTCTTTGCTTCAAACTGTCTACCTTGACCACAACAATTTCACATCCATCCCTGCCGGTTGTTTCCAAGGACTCACCAGCTTGCAGACCCTCAGCTTGAGCTACAACATCAACTTGGAACCTTGGACGTTTCCAACCGATTTGACTCAATCTTCGAATCTGGGGGTTCTTGAGCTCGGAAATGCTAATCTTATGGGTTCTTTGCCGAATATTTTCGAATCCTTCCCGAGCTTGCAGAGTGTTCGTCTCTCTTACAACAACCTCACTGGTGGGTTGCCTGCCTCCTTTGGTGGATCTGAAATTGTGAACTTATGGCTTAACAATCAATTCAATGGGTTATCGGGTACAATCGACGTGTTGTCATCAATGAACCAGTTGTCTCAGGTGTGGCTTCATAAGAACCAGTTCACAGGTCCCATTCCTGACTTGTCCAAATGCAAGAGTTTGTTTGATTTGCAACTTCGGGACAATGAGTTGACTGGTATAATCCCACCTTCTCTGATGGCTCTCTCAAGCTTAAAGAACGTTTCTTTGGACAACAATGAGCTGCAGGGGCCTGTGCCCGAGTTTGGCAAAGATGTGCAGGTTACTCTTGATGGGATTAATAGTTTTTGTCAAAAAAGTGCAGGACCTTGCGATGCGCGGGTGACCACTTTGCTTGAGATTGCTGCAGCATTTGGGTATCCGATTAGGTTGGCGGATTCATGGCGAGGGAATGATCCTTGTGCAGATTGGAGTTTCATTGTGTGTACAGGGGGAAAGATTACTACGGTGAATATGGCGAAGCAGAATTTCCAGGGAACAATCTCACCTTCCTTTGGGAATCTAACAGATTTAAGGAACTTGTATCTGAATGATAATAATTTGACTGGTTCAATACCACAGAGCTTGACAACTTTGCCTCAACTTGTGGTTCTTGATGTATCTAACAATCATCTTTCTGGAGAGGTTCCTAAATTCTCAACAAAGGTGAAGTTGACATCTACCGGTAATATTTTGCTTGGGAAAACTCCCAGTTCTGGAGGTGGAGGAAATGGAAGTAGTCCTGCTACTGGTTCTGATGATAGTACACCAGTTGGAAGTCCATCTGAAAAGGGAACTAATTCTTCATTGTCACCTGGTTGGATCGCGGGTATAGTCATTATTGTCCTATTTTTTGTGGCAGTGGTATTGTTTGTCTCTTGCAAGTGTTATGCTAAAAATCGTCATCAGAAATTTGGAAGGGTTGATAATCCTGAAAATGGAAAGGGAGACGTTAAAATTGATGTAATGAGTGTTTCCAATGGATATGCTGGAGTTCCGAGCGAGTTACAAAGCCAGAGCAGTGGTGATCGTAGTGAGCTTCATGTTTTTGAGGGTGGCAATGCTACAATTTCAATTCAAGTTCTTCGGCAAGTGACAAATAATTTCAATGAAGATAACATTTTGGGTAGGGGAGGATTTGGAGTTGTTTACAAAGGGGAATTGCATGATGGAACAAAAATTGCTGTGAAGAGGATGGAATCTGTTGCAACGGGAAGCAAAGGACTGAATGAGTTCCAAGCAGAGATTGCAGTCCTTACTAAAGTCAGGCATAGGCATTTGGTTGCTCTTTTAGGGTATTGCATTAATGGCAATGAAAGGCTTTTGGTTTATGAGTATATGCCTCAAGGGACGCTAACACAACATCTGTTTGATTGGCGTGACAATGGTTGCGCACCTCTAACGTGGAAGCAAAGGGTAGCAGTAGCTTTGGATGTAGCACGGGGAGTGGAATACTTGCACAGCTTAGCTCAGCAAAGCTTCATTCACAGAGACTTAAAACCTTCAAACATACTTCTAGGTGATGACATGAGAGCAAAGGTTGCAGATTTTGGGTTGGTTAAAAATGCACCTGATGGGAAGTATTCTGTTGAGACACGGTTGGCTGGAACATTTGGGTATCTTGCACCTGAATATGCAGCTACTGGAAGAGTTACAACCAAAGTAGATGTGTATGCATTTGGGGTTGTTTTGATGGAACTGATCACTGGTAGAAGGGCATTGGATGATACTGTCCCTGATGAAAGATCTCACTTGGTATCATGGTTCCGTAGGGTACTAATTAACAAGGAGAACATTCCAAAGGCTATCGAGCAAACTCTCAACCCGGATGAGGAGACCATGGAGGGCATATATAAAGTGGCTGAGCTTGCAGGGCATTGCACTGCTCGCGAGCCATACCAAAGGCCTGATATGGGCCATGCAGTGAATGTGTTGGTCCCTCTTGTAGAGCAGTGGAAACCCACTAGCCATGAAGAAGAAGAAAGTTATGGTATTGACCTTCACATGAGCCTGCCTCAAGCTCTGCAAAGATGGCAAGCCAATGAAGGCACTTCTGCAATGTTTAGTGACATTTCACAAACCCAATCAAGCATCCCCTCAAAACCTTCGGGATTTGCAGATTCCTTTGATTCAATGGATTGCAGGTAG 2775 0.4465 MGQLKLKTLVSLSILIFSLLSSAIADDASVMSNLNKAISPTLSGWSEKTSFCDWDGVKCDNSGRVTSINLASQSLSGTLPSDLNSLSQLTTLSLQKNAFSGPLPSLAKLSLLQTVYLDHNNFTSIPAGCFQGLTSLQTLSLSYNINLEPWTFPTDLTQSSNLGVLELGNANLMGSLPNIFESFPSLQSVRLSYNNLTGGLPASFGGSEIVNLWLNNQFNGLSGTIDVLSSMNQLSQVWLHKNQFTGPIPDLSKCKSLFDLQLRDNELTGIIPPSLMALSSLKNVSLDNNELQGPVPEFGKDVQVTLDGINSFCQKSAGPCDARVTTLLEIAAAFGYPIRLADSWRGNDPCADWSFIVCTGGKITTVNMAKQNFQGTISPSFGNLTDLRNLYLNDNNLTGSIPQSLTTLPQLVVLDVSNNHLSGEVPKFSTKVKLTSTGNILLGKTPSSGGGGNGSSPATGSDDSTPVGSPSEKGTNSSLSPGWIAGIVIIVLFFVAVVLFVSCKCYAKNRHQKFGRVDNPENGKGDVKIDVMSVSNGYAGVPSELQSQSSGDRSELHVFEGGNATISIQVLRQVTNNFNEDNILGRGGFGVVYKGELHDGTKIAVKRMESVATGSKGLNEFQAEIAVLTKVRHRHLVALLGYCINGNERLLVYEYMPQGTLTQHLFDWRDNGCAPLTWKQRVAVALDVARGVEYLHSLAQQSFIHRDLKPSNILLGDDMRAKVADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKVDVYAFGVVLMELITGRRALDDTVPDERSHLVSWFRRVLINKENIPKAIEQTLNPDEETMEGIYKVAELAGHCTAREPYQRPDMGHAVNVLVPLVEQWKPTSHEEEESYGIDLHMSLPQALQRWQANEGTSAMFSDISQTQSSIPSKPSGFADSFDSMDCR 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2756 924 SUPERFAMILY Protein kinase-like (PK-like) 555 863 IPR011009 -
Glsi12g2756 924 MobiDBLite consensus disorder prediction 442 477 - -
Glsi12g2756 924 Gene3D Ribonuclease Inhibitor 26 320 IPR032675 -
Glsi12g2756 924 Gene3D Transferase(Phosphotransferase) domain 1 656 879 - -
Glsi12g2756 924 SMART LRR_typ_2 408 431 IPR003591 -
Glsi12g2756 924 SMART LRR_typ_2 109 132 IPR003591 -
Glsi12g2756 924 SMART LRR_typ_2 384 407 IPR003591 -
Glsi12g2756 924 SMART LRR_typ_2 183 206 IPR003591 -
Glsi12g2756 924 Pfam Protein tyrosine and serine/threonine kinase 581 852 IPR001245 GO:0004672|GO:0006468
Glsi12g2756 924 CDD STKc_IRAK 584 857 - -
Glsi12g2756 924 SMART serkin_6 578 858 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g2756 924 Gene3D Phosphorylase Kinase; domain 1 541 655 - -
Glsi12g2756 924 SUPERFAMILY L domain-like 31 435 - -
Glsi12g2756 924 PANTHER OSJNBA0070M12.3 PROTEIN 10 924 - -
Glsi12g2756 924 FunFam receptor protein kinase TMK1 540 655 - -
Glsi12g2756 924 Pfam Leucine rich repeat N-terminal domain 324 358 IPR013210 -
Glsi12g2756 924 Pfam Leucine rich repeat N-terminal domain 32 60 IPR013210 -
Glsi12g2756 924 FunFam Leucine-rich repeat receptor-like kinase 322 445 - -
Glsi12g2756 924 FunFam receptor protein kinase TMK1 656 873 - -
Glsi12g2756 924 MobiDBLite consensus disorder prediction 900 924 - -
Glsi12g2756 924 FunFam Receptor-like kinase TMK4 25 318 - -
Glsi12g2756 924 ProSiteProfiles Protein kinase domain profile. 578 858 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g2756 924 Gene3D Ribonuclease Inhibitor 321 445 IPR032675 -
Glsi12g2756 924 ProSitePatterns Protein kinases ATP-binding region signature. 584 606 IPR017441 GO:0005524
Glsi12g2756 924 Pfam Leucine rich repeat 112 147 IPR001611 GO:0005515
Glsi12g2756 924 Pfam Leucine rich repeat 366 421 IPR001611 GO:0005515
Glsi12g2756 924 ProSitePatterns Serine/Threonine protein kinases active-site signature. 703 715 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2756 Glsi-ChrGlsi12 40864033 40867444 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2756 65 854 Receptor kinase-like Gene Family AT5G07280 32.274 3.92e-90 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Glsi12g2756 PK_Tyr_Ser-Thr 1.2e-47 CL0016