Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2738 ATGATTCCAGAATCCATAAGCATCAAGTTCCTCGTAGGCCTGCTTTACCAACTTATAAGATTCTTTGTTGTGATGGCACTAGATCATTTTCTTCCATCAGGACAAGCTCCTCCTCCTCCTCATGCTGCTGCTGAAAGTTCCTCTTCCACAACACGTAGCCATGTCCTAATATTGGATGGCCTATCACCAACTCTAATCCCAGTTCACGTTCTAACTTCACGGATCAAGGAGAGGCTTCCCATTATAGAGTTCAACAAGTTCTTGAAGAGATCAATGCATGATGAAGGACTAGAAGTAGAAAAACAAGAAATGGAATGTGCTGTTTGTTTGAACACGATTGAGGGTAGCCACAAGATCAGAGAGATATCAAATTGTTGTCACATATTTCACAGGGAGTGCTTGGATAGATGGGTTGATGAGAACCAGGTGACTTGCCCTTTGTGCAGATGCATGCTACTTCCAGGTTTTGTTGCCTGTCTCATTTCAAGTATTGTTTCTTGCGAGTCTCTCTCCACCGACTTTCAAGTTATAAAATATGGGAAAGAGCAAGATGTTAAACAAACTCTTATTTCAATTAGCAGCAAATCTCGTTTCCACCGCAGGAATTGCAAGTCAAATCTGAACATAATCTCATATGAAGACAACATTTTCTGA 654 0.4098 MIPESISIKFLVGLLYQLIRFFVVMALDHFLPSGQAPPPPHAAAESSSSTTRSHVLILDGLSPTLIPVHVLTSRIKERLPIIEFNKFLKRSMHDEGLEVEKQEMECAVCLNTIEGSHKIREISNCCHIFHRECLDRWVDENQVTCPLCRCMLLPGFVACLISSIVSCESLSTDFQVIKYGKEQDVKQTLISISSKSRFHRRNCKSNLNIISYEDNIF 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2738 217 Pfam Ring finger domain 105 149 IPR001841 -
Glsi12g2738 217 SUPERFAMILY RING/U-box 100 154 - -
Glsi12g2738 217 PANTHER RING ZINC FINGER PROTEIN-RELATED 71 154 - -
Glsi12g2738 217 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 154 IPR013083 -
Glsi12g2738 217 ProSiteProfiles Zinc finger RING-type profile. 106 149 IPR001841 -
Glsi12g2738 217 SMART ring_2 106 148 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2738 Glsi-ChrGlsi12 40767904 40769386 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2738 75 157 C3H Transcription Factor Family AT3G43430 42.857 5.89e-17 73.6