Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2737 ATGGAGAATCTAGTAACTCACAGCCACATCCATTGCCTGCACCGCCACCCCAAGTGCAAAACAACAAAAACTTGCAACAACTTCTTCCTTGAAGCGCAATTGAGAAAACCCTCCACCAAATTTCCATCCCTCACCACTCAAATCCGTCTTCCCTCTGTCCCTCTCTCACCAACAGATACCGCTTCCATTAAGCATAGAACCCTTCTTGTTGAGACTTACCATGAGCATCACAGACTCAAAATCTTACTGCAAAAGCTGCAGAAGAAAGATTCATGCCCTCTGCAGATACTCACAGAAGATGGTGATTGGTCCAAAGAGTATTTCTGGGCCGTCGTCAGGTTCCTTAAACATGCCTCCAGATCTAAAGAAATTCTCCAGGTATTTGATATGTGGAAAAACATTGAAGAATCACGTATTAGCGAGTACAACTATGACAAGATAATATGCGCCTTGACTGAAGAAGGATTGGTGGAAGACGCGGTATCTGCACTGCAGGAGATGAAAAATCATGGACTCAAACCTTCTTTGGCGACCTACAATCCAATAATTCATGGTTTCTCCGGAGAAGGTAAATTCAGCGATGCTCTATGTTTTCTTAGTGAGATGAAAGCATTCGGTTTAGTGCCGGACACTGAAACCTATGATAGTTTGGTTCAAGCCTACGGGAAATTTAAGATGTATGATGAGATGGGCATGTGTGTGAAAAATATGGAGTTAGATGGATGTTCTCCCGATCATATAACTTATAATATACTTATCCGAGAATATTCGCGAGGTGGGCTGCTTAAGAGAATGGAAGCAATATCTCAGAGAATGTTTTCCAAAGGAATGCCTTTGCAGTCTTCTACTTTGGTTGCAATGCTTGAGGCTTATGCCAGATTTGGGATAGTTATAAAGATGGAAAAAATTTATAGAAAACTTTTGTACTCTCAAACCCGTCTGGAGGATGATTTGATCAGAAAACTGGCTGAAGTTTATATTAAGAACTATATGTTTTCTAGATTGGAGGACTTGGGCCTTGACTTTCGTTCCACATTTGGTGCAACTGAACTTGTATGGTGTCTGCGCCTCCTTTCTTATGCTTGTCTTTTGAGTCGAAAAGGCATGGATGTTGTTGTACGAGAAATGCAAGAAGCCAAGGTTCACTGGAATGTTACAGTTGCAAATATTATCATGCTAGCTTATATGAAGATGAATGATTTCAAGCACTTGAGAATTTTGCTTTCTCAATTGCCAACCCATCAGGTGAAGCCTGATATGGTCACTATCGGAATTCTTTTTGATGCAACTAGAATTGGTTTTGATGGCAGTGAAACTTTAGAAACATGGAGAAGGTTAGGCTATCTTTACAGAGATGTAGAAATGGAAACAGATCCTCTGGTCCTTACTGCATTTGGGAAAGGTCATTTTCTTAAAACCTGTGAAAAAGTGTACTCTTCCCTGCACCCTGAGCATAGAGAGAGGAAAACATGGACTTATGAGGGCCTCATTGATTTAGTGTCTGAACATATTGAAGGTAGTATCAGCGATAGGAAACCAACTAAGTCAGCTAATCTTTGGTTTTTTAATAGTGAGAGAAACCAAATGTGA 1590 0.4057 MENLVTHSHIHCLHRHPKCKTTKTCNNFFLEAQLRKPSTKFPSLTTQIRLPSVPLSPTDTASIKHRTLLVETYHEHHRLKILLQKLQKKDSCPLQILTEDGDWSKEYFWAVVRFLKHASRSKEILQVFDMWKNIEESRISEYNYDKIICALTEEGLVEDAVSALQEMKNHGLKPSLATYNPIIHGFSGEGKFSDALCFLSEMKAFGLVPDTETYDSLVQAYGKFKMYDEMGMCVKNMELDGCSPDHITYNILIREYSRGGLLKRMEAISQRMFSKGMPLQSSTLVAMLEAYARFGIVIKMEKIYRKLLYSQTRLEDDLIRKLAEVYIKNYMFSRLEDLGLDFRSTFGATELVWCLRLLSYACLLSRKGMDVVVREMQEAKVHWNVTVANIIMLAYMKMNDFKHLRILLSQLPTHQVKPDMVTIGILFDATRIGFDGSETLETWRRLGYLYRDVEMETDPLVLTAFGKGHFLKTCEKVYSSLHPEHRERKTWTYEGLIDLVSEHIEGSISDRKPTKSANLWFFNSERNQM 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2737 529 Gene3D Tetratricopeptide repeat domain 82 235 IPR011990 GO:0005515
Glsi12g2737 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 140 174 IPR002885 -
Glsi12g2737 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 175 209 IPR002885 -
Glsi12g2737 529 Gene3D Tetratricopeptide repeat domain 352 505 IPR011990 GO:0005515
Glsi12g2737 529 Gene3D Tetratricopeptide repeat domain 236 334 IPR011990 GO:0005515
Glsi12g2737 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 245 279 IPR002885 -
Glsi12g2737 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 210 244 IPR002885 -
Glsi12g2737 529 PANTHER OS08G0520200 PROTEIN 43 503 - -
Glsi12g2737 529 Pfam PPR repeat family 174 221 IPR002885 -
Glsi12g2737 529 NCBIfam pentatricopeptide repeat 213 245 IPR002885 -
Glsi12g2737 529 NCBIfam pentatricopeptide repeat 144 175 IPR002885 -
Glsi12g2737 529 NCBIfam pentatricopeptide repeat 178 211 IPR002885 -
Glsi12g2737 529 Pfam PPR repeat 247 276 IPR002885 -
Glsi12g2737 529 Pfam PPR repeat 147 172 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2737 103 429 Glycosyltransferase AT1G05670 21.302 8.59e-10 59.7