Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi12g2735 | ATGCGTGACGCAGCTATGATGAGACTAAGAGAAGCAAACACGATGAAGGGCAGGAGCAACTCAAAAGATTTTCCCAATTCGAATCCTTCATCTTCGTTACTGACGCGGACCACCATGTCGGAATTGGCGAACACAGATCCCGAAGGTGTCGATGGAGTCCGCATGACATGGAACGTGTGGCCCCGCACCAAGGTCGAAGCTAGCAAGTGCGTCATCCCACTTGCTGCAACAATCTCCTTGATCCGTCCTCACGCCGACATTCCACGCCTCCCTTACGCCCCTCTCCGCTGCAAGACCTGCACCGCTATTCTCAACCCCTTCTCTCGCGTCGACTTCACTGCCAAGATCTGGATCTGTCCCTTTTGCTATCAGCGTAATCATTTCCCCCCTCACTATAATGCGATCTCCGAGACCAATGTCCCCGGGGAGCTTTACCCCCAGTACACCACTGTTGAATATGCTCTTCCTCTTCCCACAAACCCCAATTCATTCGGGAACCCAAATCTTGATCCGACCCATCAATTGCACCCTTCTCCTGTTTTTGTTTTTGTGCTTGATACGTGTATGATCGAGGAGGAGATGGAGTTTGTGAAATCCGCACTTAGACGGGCGATCGGGCTGCTACCTGACAATGCTCTCGTGGGTTTCGTGTCTTTTGGTACCCAGGTTCAAGTTCATGAATTGGGGTTCTCGGACATGTCCAAGGTTTATGTCTTCCGGGGTAGTAAGGAAATCTCGAAGGAACAGATTTTGGAGCAACTGGGCCTGGGTGCTTCTGGTAGGAGGCAGCCCGGAGGATATCAAAAGGGGGTGCAGGGTGGATACCCCCCTTCAGGTGTCACGCGGTTTTTGCTGCCGGCGTCTGATTGTGAATACACTCTCAATTCGCTACTGGATGAATTGCAAACCGATCAATGGCCTGTTCCACCAGGCAGTCGTCCATCTCGGTGCACTGGAGTGGCTTTAAGTGTTGCTGCGGGATTGCTTGGTGCTTGTGTACCTGGTACCGGGGCTAGAATCATAGCTTTGGTCGGGGGTCCATGCACAGAAGGACCAGGCTCGATTATATCCAAAGATCTATCTGACCCGGTGCGATCTCATAAAGATCTTGATAAAGACGCAGCATCCTACTTCAAAAAGGCTGTCAAATTTTTTGAGAGTCTTGCAAAACAACTGGTTAACCAGGGTCATGTTTTAGATCTTTTTGCATCGGCACTTGATCAGGTTGGAGTTGCAGAAATGAAAGTTGCAGTTGAACGAACTGGTGGCCTTGTTGTTCTGGCCGAAAGTTTTGGTCATTCAGTATTCAAGGACTCCTTTAAGCGTATTTTTGAGGATGGGGAGCAATCACTTGGTCTTTGTTTCAATGGAACCCTTGAGATCAATTGCTCCAAGGAAATAAAAATTCAGGGAATTATTGGACCCTGCACATCATTGGAAAAGAAAGGGCCTTCTGTTGCTGATACTGTGATAGGAGAGGGAAATACAACAGCATGGAAGATGTGTGGCCTTGACAAGAGTACATGCTTGACAGTGATGTTTGATCTTTCATCAAGTGATCGTTCAAATACTCCAGGAGCTGTCAACCCACAGTTGTACCTACAGTTCCTTACAAGTTACCAGGGCCCAGATGGTCAATCAGTGCTTCGTGTTACTACAATAACTAGAAGATGGGTAGATAGTGCTGTTAGCTCTGAGGAATTGGTACAAGGATTTGATCAAGAAACAGCTGCAGTGGTAATGGCTAGATTCGCATCTCTGAAAATGGAGACAGAGGAAACATTTGATGCAACACGGTGGTTAGATCGATTCCTCATTCGTCTCTGTTCTAAGTTTGGTGACTATCGCAAGGATGATCCTTCATCGTTTACATTAAACCCATCATTTTCATTGTTCCCTCAGTTTATGTTCAATCTACGACGGTCGCAGTTTGTACAGGTTTTTAACAATAGCCCAGATGAGACTGCCTACTTCCGCATGTTGTTAAACAGGGAAAATATTACTAATGCTGCTGTCATGATTCAGCCATCTTTAATATCATATTCATTCAATTCACTTCCTGCACCAGCATTGTTGGATGTATCTTCCATTGCCGCTGACCGGATTCTCTTGTTAGATTCATATTTCAGTGTTGTCATTTTTCATGGGATGACAATAGCTCAGTGGCGCAACTTGGGATACCAGAACCAACCAGAACACCAGGCATTTGCGCAATTATTACAAGCTCCCCATGATGATGCTCAAATTATTATTAGAGATCGTTTTCCTGTTCCTAGACTGGTAGTGTGTGATCAACATGGTTCCCAGGCTAGATTTTTGTTAGCGAAGCTGAACCCTTCGGCAACATACAATAATGCACATGAGATTGCTGCTGGTTCAGATGTGATCTTCACCGATGATGTGAGCCTTCAAGTCTTCTTTGAGCATCTTCAAAAGCTGGCTGTCCAATCTTGA | 2454 | 0.4641 | MRDAAMMRLREANTMKGRSNSKDFPNSNPSSSLLTRTTMSELANTDPEGVDGVRMTWNVWPRTKVEASKCVIPLAATISLIRPHADIPRLPYAPLRCKTCTAILNPFSRVDFTAKIWICPFCYQRNHFPPHYNAISETNVPGELYPQYTTVEYALPLPTNPNSFGNPNLDPTHQLHPSPVFVFVLDTCMIEEEMEFVKSALRRAIGLLPDNALVGFVSFGTQVQVHELGFSDMSKVYVFRGSKEISKEQILEQLGLGASGRRQPGGYQKGVQGGYPPSGVTRFLLPASDCEYTLNSLLDELQTDQWPVPPGSRPSRCTGVALSVAAGLLGACVPGTGARIIALVGGPCTEGPGSIISKDLSDPVRSHKDLDKDAASYFKKAVKFFESLAKQLVNQGHVLDLFASALDQVGVAEMKVAVERTGGLVVLAESFGHSVFKDSFKRIFEDGEQSLGLCFNGTLEINCSKEIKIQGIIGPCTSLEKKGPSVADTVIGEGNTTAWKMCGLDKSTCLTVMFDLSSSDRSNTPGAVNPQLYLQFLTSYQGPDGQSVLRVTTITRRWVDSAVSSEELVQGFDQETAAVVMARFASLKMETEETFDATRWLDRFLIRLCSKFGDYRKDDPSSFTLNPSFSLFPQFMFNLRRSQFVQVFNNSPDETAYFRMLLNRENITNAAVMIQPSLISYSFNSLPAPALLDVSSIAADRILLLDSYFSVVIFHGMTIAQWRNLGYQNQPEHQAFAQLLQAPHDDAQIIIRDRFPVPRLVVCDQHGSQARFLLAKLNPSATYNNAHEIAAGSDVIFTDDVSLQVFFEHLQKLAVQS | 817 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi12g2735 | 817 | CDD | Sec23_C | 665 | 785 | IPR037550 | GO:0030127|GO:0090114 | |
| Glsi12g2735 | 817 | FunFam | Protein transport protein SEC23 | 675 | 779 | - | - | |
| Glsi12g2735 | 817 | MobiDBLite | consensus disorder prediction | 18 | 35 | - | - | |
| Glsi12g2735 | 817 | Gene3D | Severin | 675 | 779 | IPR029006 | - | |
| Glsi12g2735 | 817 | SUPERFAMILY | C-terminal, gelsolin-like domain of Sec23/24 | 676 | 816 | IPR036180 | - | |
| Glsi12g2735 | 817 | MobiDBLite | consensus disorder prediction | 12 | 35 | - | - | |
| Glsi12g2735 | 817 | Pfam | Sec23/Sec24 trunk domain | 178 | 444 | IPR006896 | GO:0006886|GO:0006888|GO:0030127 | |
| Glsi12g2735 | 817 | SUPERFAMILY | vWA-like | 179 | 445 | IPR036465 | - | |
| Glsi12g2735 | 817 | SUPERFAMILY | Helical domain of Sec23/24 | 573 | 675 | IPR036175 | GO:0006886|GO:0006888|GO:0030127 | |
| Glsi12g2735 | 817 | SUPERFAMILY | Zn-finger domain of Sec23/24 | 87 | 156 | IPR036174 | GO:0006886|GO:0006888|GO:0008270|GO:0030127 | |
| Glsi12g2735 | 817 | Gene3D | von Willebrand factor, type A domain | 178 | 453 | IPR036465 | - | |
| Glsi12g2735 | 817 | Gene3D | - | 91 | 150 | - | - | |
| Glsi12g2735 | 817 | Pfam | Gelsolin repeat | 685 | 773 | IPR007123 | - | |
| Glsi12g2735 | 817 | Gene3D | Sec23/Sec24 helical domain | 570 | 814 | - | - | |
| Glsi12g2735 | 817 | FunFam | Protein transport protein SEC23 | 91 | 150 | - | - | |
| Glsi12g2735 | 817 | Pfam | Sec23/Sec24 zinc finger | 94 | 132 | IPR006895 | GO:0006886|GO:0006888|GO:0008270|GO:0030127 | |
| Glsi12g2735 | 817 | Gene3D | - | 48 | 556 | - | - | |
| Glsi12g2735 | 817 | PANTHER | PROTEIN TRANSPORT PROTEIN SEC23 | 45 | 816 | IPR037364 | - | |
| Glsi12g2735 | 817 | Pfam | Sec23/Sec24 beta-sandwich domain | 455 | 558 | IPR012990 | - | |
| Glsi12g2735 | 817 | FunFam | Protein transport protein SEC23 | 178 | 454 | - | - | |
| Glsi12g2735 | 817 | FunFam | Protein transport protein SEC23 | 570 | 693 | - | - | |
| Glsi12g2735 | 817 | SUPERFAMILY | beta-sandwich domain of Sec23/24 | 46 | 572 | - | - | |
| Glsi12g2735 | 817 | Pfam | Sec23/Sec24 helical domain | 573 | 669 | IPR006900 | GO:0006886|GO:0006888|GO:0030127 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Glsi12g2735 | Glsi-ChrGlsi12 | 40743248 | 40751840 | Dispersed/Wgd |