Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2734 ATGGATGACGATTTTGAGTTCCCAGCTGCGACCAACATGGGCAACGAAGACGAAGACATGGGAATTCCGGAGGACGAAACAGTTAGCCCGATTCTCAAGGTTGGGGAGGAAAAGGAGATTGGAAAGAATGGTTTGAAGAAGAAGCTGGTTAAGGAAGGTGAAGGATGGGAGACTCCAAGCACTGGAGACGAAGTTGAAGTTCATTACACCGGAACTTTGCTTGATGGAACCCAGTTCGATTCTAGCCGAGATAAGGGAACCACTTTTAAGTTCAAACTTGGGCACGGGCAAGTGATAAAGGGATGGGACGAAGGTATAAAAACCATGAAGAAAGGTGAACGTGCCATTTTCACAATACCCCCAGAGTTGGCCTATGGAGAGTCTGGATCTCCTCCAACTATTCCCCCAAATGCAACTCTACAGTTTGATGTGGAATTGCTGTCTTGGACAAGTGTGCAGGACATATGCAAGGATGGGGGGATATTGAAAAAAATAATCACTGAAGGAGAGAATTGGGAAAATCCTAAGGATCTGGATGAAGTGTTTGTTAAGTATGAAGCTCGGCGTGAAGATGGGACACTCATTTCGAAATCTGATGGGTTAGAATTCACCGTGCAAGATGGCTATTTCTGTCCCGCTTTGGCTAAGGCTGTAAAAAAAATGAAGAAAGGAGAGAAAGTCCTCTTGACCGTGAAGCCACAATATGCGTTTGGCGAGAATGGAAGGCCAGCATCTGGCGACGAAAGTGCTGTTCCTCCTAATGCTTCACTCCAAATAAGTCTCGAGTTGGTCTCTTGGAAGACTGTAACTGACATTACGAAGGATAAGAAGGTTCTCAAAAAGACTTTGAAGGAGGGGGAGAAATATGACCGACCAAATGATGGAGCTGTTGTTCAAGTTAAACTTATTGGCAAGCTGCATGATGGGACTGTTTTCACTAAGAAAGGTCACGATAACGAGCAGCCATTTGAGTTCAAAATTGATGAAGAGCAAGTAATTGCGGGACTCGATAGAGCTGTGAAGAACATGAAGAAAGGGGAAATTGCCCTGGTGACCATACAACCTGAATATGCTTTTGGTGCTTCCGGGTCACCTCAAGAACTGGCTACTGTTCCTCCCAATTCAACTGTATCCTATGAAGTGGAGCTGCTTTCTTTTGTAAAAGAAAAGGAGGCATGGGAGTTTAACACACCGGAGAAGATTGAAGCAGCTAGAAAGAAAAAGGAGGAAGGAAATGCATTATTCAAGACTGGTAAATATGAAAGAGCATCAAAGAGATATGAAAAGGCCATAAGGTTTATTGAGTTTGACTCTAACTTCAGTGATGATGAGAAACAGCAGACGAAGGTTTTGAGAATCACCTGCAACCTCAATAATGCTGCCTGCAAGTTAAAGCTGAAAGACTACAAGCAGGCAGAGAAGTTGTGCTCGAAGGTATTGGAACTTGATAGTAGAAATGTAAAAGCTCTGTACCGAAGGGCACAAGCATATATTCAACTTGTGGATTTGGATCTTGCTGAAATGGACATTAAGAAAGCCCTTGAACTTGAGCCAGACAATAGGGATGTGAAAATGGAGTACAAAATTGTGAAGGAGAAAGTGAGAGAATACAAGAAGAAAGATGCACAGTTCTATGGCAGCATATTTGCGAAAATGAATAAGCTAGAACAAGCGATAACAGCAAATGCAGCAGCAAAGCAGGATCACGTACCAGTGACTATTGATAGTAAAGCGTGA 1737 0.4318 MDDDFEFPAATNMGNEDEDMGIPEDETVSPILKVGEEKEIGKNGLKKKLVKEGEGWETPSTGDEVEVHYTGTLLDGTQFDSSRDKGTTFKFKLGHGQVIKGWDEGIKTMKKGERAIFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVQDICKDGGILKKIITEGENWENPKDLDEVFVKYEARREDGTLISKSDGLEFTVQDGYFCPALAKAVKKMKKGEKVLLTVKPQYAFGENGRPASGDESAVPPNASLQISLELVSWKTVTDITKDKKVLKKTLKEGEKYDRPNDGAVVQVKLIGKLHDGTVFTKKGHDNEQPFEFKIDEEQVIAGLDRAVKNMKKGEIALVTIQPEYAFGASGSPQELATVPPNSTVSYEVELLSFVKEKEAWEFNTPEKIEAARKKKEEGNALFKTGKYERASKRYEKAIRFIEFDSNFSDDEKQQTKVLRITCNLNNAACKLKLKDYKQAEKLCSKVLELDSRNVKALYRRAQAYIQLVDLDLAEMDIKKALELEPDNRDVKMEYKIVKEKVREYKKKDAQFYGSIFAKMNKLEQAITANAAAKQDHVPVTIDSKA 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2734 578 Gene3D - 154 267 IPR046357 GO:0003755
Glsi12g2734 578 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 291 384 IPR001179 GO:0003755
Glsi12g2734 578 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 57 147 IPR001179 GO:0003755
Glsi12g2734 578 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 173 263 IPR001179 GO:0003755
Glsi12g2734 578 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 295 387 IPR001179 GO:0003755
Glsi12g2734 578 SUPERFAMILY FKBP-like 24 155 - -
Glsi12g2734 578 SMART tpr_5 487 520 IPR019734 GO:0005515
Glsi12g2734 578 SMART tpr_5 453 486 IPR019734 GO:0005515
Glsi12g2734 578 SMART tpr_5 404 437 IPR019734 GO:0005515
Glsi12g2734 578 ProSiteProfiles TPR repeat profile. 487 520 IPR019734 GO:0005515
Glsi12g2734 578 Pfam Tetratricopeptide repeat 488 520 IPR019734 GO:0005515
Glsi12g2734 578 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 178 267 IPR001179 GO:0003755
Glsi12g2734 578 Gene3D - 37 153 IPR046357 GO:0003755
Glsi12g2734 578 Gene3D Tetratricopeptide repeat domain 390 547 IPR011990 GO:0005515
Glsi12g2734 578 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 62 150 IPR001179 GO:0003755
Glsi12g2734 578 PANTHER PEPTIDYLPROLYL ISOMERASE 22 150 - -
Glsi12g2734 578 FunFam Peptidylprolyl isomerase 154 267 - -
Glsi12g2734 578 SUPERFAMILY FKBP-like 154 270 - -
Glsi12g2734 578 SUPERFAMILY FKBP-like 272 406 - -
Glsi12g2734 578 FunFam Peptidylprolyl isomerase 35 153 - -
Glsi12g2734 578 SUPERFAMILY TPR-like 396 553 IPR011990 GO:0005515
Glsi12g2734 578 MobiDBLite consensus disorder prediction 1 23 - -
Glsi12g2734 578 FunFam Peptidylprolyl isomerase 268 389 - -
Glsi12g2734 578 Coils Coil 520 540 - -
Glsi12g2734 578 Gene3D - 268 389 IPR046357 GO:0003755
Glsi12g2734 578 FunFam Peptidylprolyl isomerase 392 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2734 Glsi-ChrGlsi12 40737158 40740442 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2734 29 578 Calmodulin-binding Proteins AT5G48570 71.248 0.0 815