Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2732 ATGGTTACAATCCTCAAAGTTCGTAGCATCTTCTTTGCCACAAATCCACTAAGATTGAGCCCGTGTGCTGCTTTGAGATTTTGTCATTTTGAGTCAGAATGGGGTTGCAGTACTTTGGGTTGCAATTTGAAATTTTCGCGAACCAGCCCACGTAGCAGCGTTGGGATATTTTGGGATTTAGATAACAAACCACCCAAGTCATTGCCACCTTATGAAGCAGCCACTAAACTGAAAGCCGCTGCATCTTACTTTGGGGTTGTCCGGCATATGGTGGCTTATGCGAATCGCTACACTTTTGGCCATGTCCCACAGGTTGTCCGGGAACGGAGAAAAGAGAGGAAGTTGTTGAATCATTTAGAGAACAAGGGTGTGATCAAGCAAGCTGAACCTTATCTTTGTCGGGTTTGTGGAAGAAAATTTTATACGAATGAGAAGCTTGTTAATCATTTTAAGCAAATTCATGAGCGTGAGCATATGAAAAGATTGAACCAGATAGAGTCAGCAAAAGGTAACAGGAGGGTGAAGTTGGTTGCCAAGTATTCAATGAAAATGGATAAGTATAAAAATGCTGCGAGGGGTATTTTGACTCCCAAAGTGGGGTATGGTTTGGCAGATGAGCTAAAACGAGCAGGCTTTTGGGTTCAGACTGTGTTGGATAAGCCACAAGCTGCAGATCTTGCATTGAAAGGTCACGTGGTAGATATGATGGATTGTAGGCGGGTTGAGTGTGTGGTTCTTGTGTCAGATGATTCTGATTTTGTTAATGTATTAAAGGAGGCAAAGCTACGATGTCTCAAGACAGTTGTCGTTGGGGATACCAATGATGGGGCCTTGAAGAGGACCGCTGATGCTGCCTTTTCTTGGGAGGAAATTCTGATGGGGAAGGCTAAGAAGGAGGCAGTATCAGTTGTGGAAAAATGGAAGGATCGTGATATTTTGGGAAGATTAGAGTGGACATACAACCCAGAGGTGGAAAAAAAGAAATTCAGTCTGGATGATATAGATACTGAGGCAATTGAGGATGGGGATATTGAAGATATCTGTGATGAAGTTGGTGGTGCCTATAAAAGCAAGGAAGACCCAAGTCCTTGGTGGGAATTGGATTCTGATGATGATGTCATAAAGGAATAG 1131 0.4306 MVTILKVRSIFFATNPLRLSPCAALRFCHFESEWGCSTLGCNLKFSRTSPRSSVGIFWDLDNKPPKSLPPYEAATKLKAAASYFGVVRHMVAYANRYTFGHVPQVVRERRKERKLLNHLENKGVIKQAEPYLCRVCGRKFYTNEKLVNHFKQIHEREHMKRLNQIESAKGNRRVKLVAKYSMKMDKYKNAARGILTPKVGYGLADELKRAGFWVQTVLDKPQAADLALKGHVVDMMDCRRVECVVLVSDDSDFVNVLKEAKLRCLKTVVVGDTNDGALKRTADAAFSWEEILMGKAKKEAVSVVEKWKDRDILGRLEWTYNPEVEKKKFSLDDIDTEAIEDGDIEDICDEVGGAYKSKEDPSPWWELDSDDDVIKE 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2732 376 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 49 374 - -
Glsi12g2732 376 Gene3D - 46 292 - -
Glsi12g2732 376 CDD PIN_LabA-like 141 272 - -
Glsi12g2732 376 Pfam NYN domain 203 284 IPR021139 GO:0004540
Glsi12g2732 376 SUPERFAMILY beta-beta-alpha zinc fingers 127 157 IPR036236 -
Glsi12g2732 376 ProSitePatterns Zinc finger C2H2 type domain signature. 133 154 IPR013087 -
Glsi12g2732 376 MobiDBLite consensus disorder prediction 353 376 - -
Glsi12g2732 376 ProSiteProfiles Zinc finger C2H2 type domain profile. 131 159 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2732 Glsi-ChrGlsi12 40731036 40732166 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2732 42 373 C2H2 Transcription Factor Family AT4G12240 60.807 2.55e-146 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi12g2732 NYN 4e-06 CL0280