Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2727 ATGGCCCCTCCCAAAGTTCTCATGGTCGCAGAGAAGCCAAGCATCGCTCTCTCTGTTGCCTCTGTTCTCTCCCGTGGCCAGATGTCTACAAGAAAGGGAAGCACAGAGGTTCATGAATTTGAGGGGGAATTTCTTGGATCAACTGCACACTTTAAAGTAACATCAGTTATTGGGCATATATTTAGTGTAGATTTTCCTGCTACATATCAGGATTGGACAGCTACAGATCCATTAGATCTTTTTCAAGCGCCAGTTATGAAGAATGAATCAAACCCCAAGGCACATATTTGTAGACATCTAAATCAAGAAGCTCGTGGATGTCGATATTTGGTATTGTGGTTAGATTGTGATCGTGAAGGAGAAAATATATGTTTTGAAGTTATAGAGTCAACTGCCTTCAATGTAATTGAAGCTCGAAAGAGGATTTATCGTGCACGTTTTTCTTCTGTTACTGAGAAGGATATCCTGAAGGCTCTGGACAACCTTGTGGAACCCAACAGAGATGAGGCACTGGCTGTAGATGCTAGGCAGGAGATAGACTTAAAAGTTGGAGTTGCCTTTACTCGATTTCAGACAAGTTATTTCCAGGGAAAATATGGGAACCTAGATGCAAGAGTTATATCCTATGGACCATGTCAAACTCCCACCCTAGGCTTTTGTGTGCAGCGGTATTTGCAAATAAATACCTTCAAGCCAGAAAAGTTTTGGACCTTGCACCCTTATATAATACACAATGGCTATGAAATTCTGCTAGAATGGGAACGTGGCAAATTATTTGACATAAATGTTGCTATTATGTTTCAAAAGCTGGTAACTGAAGATGGACTTTTGGAAGTTATTGATATATCAGAGGAACAGAAAACCAAAAGTCGTCCTGTTGGTCTAAACACAGTCAATCTTCTGAAGGTTGCTTCAAGTGCTTTAGGATTTGGACCTCAAATGGCTATGCAACTAGCTGAGCGCTTGTATACTCAAGGTTTCATCAGCTATCCACGCACAGAAAGCACAGCATACCCGCCTTCATTTGACTTTCATGGTGTGCTCTCTGCACAAGCAAGTAATCCAACATGGGGTCATTATGTACAGGGGCTACTCACCAATGGTTATCACAAACCTCGATTAGGAACAGATGTTGGTGACCATCCTCCTATCACCCCTATGCGGTCAGCATCTGAGGATATGGTAGGCAATGATGCTTGGAAGTTGTACCAATATGTCTGTCAACATTTCTTGGGGACGGTGTCCCCGGATTGCAAGTATGTAAGGAGAAAAGTAGAATTTTCAATTGGTGGAGAATCCTTTCATTGTACAGGGCAGCATGCTACCATCAAAGGATTTACATCTATTATGCCTTGGTTGGCAGTAAATGATAAAAATATTCCATCTTTCACGAAAGGGCAGAAAATTGAAGTGTCAAAAATGGAGCTATATGAGGGGACTACCACACCTCCAGATTATCTTAGTGAAAGTGATCTGATTTCCCTGATGGAGAAGAACGGGATAGGAACGGATGCATCAATTTCTGTACATATCAACAACATATGTGAGCGGAATTATGTGCAGGTACAAGCTGGCAGGAAGCTTGTCCCAACTACATTAGGTGTATGTTTAATAAGAGGTTATCAATCAATTGATCTAGACCTCTGCCTACCTGATATTCGTAGCTTCATTGAGCAGCAAATTACTCTTATTGCTAGGGGTCAGGTCGATCATAGTCGTGTTGTGCACCATGTACTTCAACAATTCAAGGAGAAATTCATTTACTTTGTTAAGAAGATTGAAAATATGGATGCATTGTTTGAAGCACAATTTTCTGCACTTACTGACACAGGGCGTATTATTAGTAAATGTGGTAAATGCTTGCGATATATGAAGTACATTTCTTCACAGCCATCACGTTTGTATTGTGGTACATGCGAGGAAGTTTATTATCTTCCACAAAAGGGAACAATTAAGCTGTACAAGGAACTGGCTTGTCCTTTAGACAATTTTGAGCTTTTGATCTGCTCCATGCCTGGCCCAGAGGGTAAATCATTCCCACTCTGCCCATACTGCTACAGCAATCCTCCCTTTGAAGGTATTGAAACACTCATCAATACAGCTAAAACTGGTAGTTCTGGTAAGCTAGGGAAGGGAGCTGGCATGCCATGCATCCTATGCCCCCATCCCACTTGCCCAAATTCTCTGGTTTCCCAGGGGGTCTGTGCTTGCCCAGAATGCAGTGGGACACTTGTCTTAGACCCAGTAAGTGCTCCCAAGTGGCGACTTTATTGCAATATGTGCAATTGCCTTGTTTTTCTTCCAGAAGGTGCTCATAGAATCTCCACAACGCGAGAACAATGCCCTGAATGTGACTCTATAATCATAGAAGTAGACTTCAACAAGAAAACAACTCCTCTGGAAGATGGAGCTACCTTGCACCGTGGTTGCATTCTTTGTGATGAGTTGCTTCATTCCCTTGTGGAGATGAAACATGGTAGATCGCGCATAAAGCGTGGTGGTTCAAGAGGAAGAGGAAGAGGAAGGGGAGGATATAGAGGTAGAGGACGTGGCAGTGGAAAAATGGTTGATCCAAAAATGATAGCTTCCTATCTTTGCTTGAGTTCCCGCTTTCTTAAGGCCTTCATAATTTGA 2634 0.4226 MAPPKVLMVAEKPSIALSVASVLSRGQMSTRKGSTEVHEFEGEFLGSTAHFKVTSVIGHIFSVDFPATYQDWTATDPLDLFQAPVMKNESNPKAHICRHLNQEARGCRYLVLWLDCDREGENICFEVIESTAFNVIEARKRIYRARFSSVTEKDILKALDNLVEPNRDEALAVDARQEIDLKVGVAFTRFQTSYFQGKYGNLDARVISYGPCQTPTLGFCVQRYLQINTFKPEKFWTLHPYIIHNGYEILLEWERGKLFDINVAIMFQKLVTEDGLLEVIDISEEQKTKSRPVGLNTVNLLKVASSALGFGPQMAMQLAERLYTQGFISYPRTESTAYPPSFDFHGVLSAQASNPTWGHYVQGLLTNGYHKPRLGTDVGDHPPITPMRSASEDMVGNDAWKLYQYVCQHFLGTVSPDCKYVRRKVEFSIGGESFHCTGQHATIKGFTSIMPWLAVNDKNIPSFTKGQKIEVSKMELYEGTTTPPDYLSESDLISLMEKNGIGTDASISVHINNICERNYVQVQAGRKLVPTTLGVCLIRGYQSIDLDLCLPDIRSFIEQQITLIARGQVDHSRVVHHVLQQFKEKFIYFVKKIENMDALFEAQFSALTDTGRIISKCGKCLRYMKYISSQPSRLYCGTCEEVYYLPQKGTIKLYKELACPLDNFELLICSMPGPEGKSFPLCPYCYSNPPFEGIETLINTAKTGSSGKLGKGAGMPCILCPHPTCPNSLVSQGVCACPECSGTLVLDPVSAPKWRLYCNMCNCLVFLPEGAHRISTTREQCPECDSIIIEVDFNKKTTPLEDGATLHRGCILCDELLHSLVEMKHGRSRIKRGGSRGRGRGRGGYRGRGRGSGKMVDPKMIASYLCLSSRFLKAFII 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2727 877 SUPERFAMILY Prokaryotic type I DNA topoisomerase 5 626 IPR023405 -
Glsi12g2727 877 SMART topIaneu2 283 538 IPR003602 GO:0003677|GO:0003916|GO:0006265
Glsi12g2727 877 ProSitePatterns Prokaryotic DNA topoisomerase I active site. 320 334 IPR023406 GO:0003917
Glsi12g2727 877 MobiDBLite consensus disorder prediction 829 847 - -
Glsi12g2727 877 CDD TOP1Ac 168 586 IPR013497 GO:0003677|GO:0003916|GO:0006265
Glsi12g2727 877 Gene3D Topoisomerase I, domain 4 291 416 IPR013826 -
Glsi12g2727 877 SMART toprim5 5 136 IPR006171 -
Glsi12g2727 877 CDD TOPRIM_TopoIA_TopoIII 5 162 IPR034144 -
Glsi12g2727 877 MobiDBLite consensus disorder prediction 828 852 - -
Glsi12g2727 877 PANTHER PROKARYOTIC DNA TOPOISOMERASE 5 825 IPR000380 GO:0003677|GO:0003917|GO:0006265
Glsi12g2727 877 Gene3D Topoisomerase I, domain 3 231 484 IPR013825 -
Glsi12g2727 877 FunFam DNA topoisomerase 291 416 - -
Glsi12g2727 877 Gene3D - 2 165 - -
Glsi12g2727 877 PRINTS Prokaryotic DNA topoisomerase I signature 110 123 IPR013497 GO:0003677|GO:0003916|GO:0006265
Glsi12g2727 877 PRINTS Prokaryotic DNA topoisomerase I signature 402 418 IPR013497 GO:0003677|GO:0003916|GO:0006265
Glsi12g2727 877 PRINTS Prokaryotic DNA topoisomerase I signature 207 225 IPR013497 GO:0003677|GO:0003916|GO:0006265
Glsi12g2727 877 PRINTS Prokaryotic DNA topoisomerase I signature 325 334 IPR013497 GO:0003677|GO:0003916|GO:0006265
Glsi12g2727 877 PRINTS Prokaryotic DNA topoisomerase I signature 500 514 IPR013497 GO:0003677|GO:0003916|GO:0006265
Glsi12g2727 877 SMART topIban2 141 237 IPR003601 GO:0003677|GO:0003916|GO:0006265
Glsi12g2727 877 Pfam DNA topoisomerase 165 575 IPR013497 GO:0003677|GO:0003916|GO:0006265
Glsi12g2727 877 Gene3D Topoisomerase I, domain 2 172 586 IPR013824 -
Glsi12g2727 877 FunFam DNA topoisomerase 3 165 - -
Glsi12g2727 877 Pfam Toprim domain 6 149 IPR006171 -
Glsi12g2727 877 ProSiteProfiles Toprim domain profile. 5 148 IPR006171 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2727 Glsi-ChrGlsi12 40690274 40704068 Dispersed