Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2710 ATGAGAAAAGGATGGTGCAAGAGAGAGAGAGATGAGGAGGGCAGGTCCACATTCCTCCGCTGCTTGGACAGTTCGTTTCCTGGGACATTGCAAAACATGGCTAACACTATGGCTAGGTCGTTCCTGCAAGTGGCGGCAACGGAGGAGGCTGCACCCCCTCTTAGAGTGATCCAGATGGAGGGACTGGTTATCTTAAAGATAATTAAACATTGTAAGGACCACTCACCTACTTTAGTCACCGGACAACTTCTTGGGCTGGATGTTGGCAGTGTTCTTGAAGTTACTAACTGTTTCCCCTTTCCGATTAGGGAGGAGGATGAGGAAACTGAAGCCGATGGTGCTAATTACCAGCTTGAAATGATGAGATGCTTGAGGGAGGTTAATGTTGACAACAATACTGTTGGATGGTACCAGTCTACATTGCTAGGTTCCTTTCAGACTGTGGAGCTAATTGAAACTTTCATGAATTACCAGGAGAACATAAGGCGCTGTGTTTGTATAATATATGATCCATCAAGGTCTGATCAAGGTGTCCTAGCTCTGAAGGCTTTAAAGCTTTCTGATGCATTCATGGAACTTTATCGCAGCAATAATATTACAGGAGAGAAACTCAGGGAGAAAAACTTGTCATGGGTAGATATCTTCGAGGAGATACCTATCAAAGTTTCAAATTCGGCCCTTATCAGTGCCTTTATGACAAAGCTGGAACCTGATACACCAGTAACCCAGTGTGATTATGATCGTCTCCAATTGTCAACTAGTTCATTAATGGAGAGGAATATGGAATTTTTGATTGAATGCATGGATGATTTGTCAATGGAACAGCAGAAGTTCCAATTTTACTACCGAAGCTTGTCCCGCCAACAGGCCCAGCAGCAAGCATGGCTTCAGAAGAGAAGGGCGGAGAACATGGCACGTAAAGCTGCTGGAGAGGAACCCTTGCCTGAGGAAGATCCATCAAACCCCGCTTTCAAGCCACTCCCTGAGCCATCACGGTTGGACAGCTTCCTCATAACAAATCAAATTGCTAACTATTGCAACCAAATTAATGGGGTGTCAGGGCAGAGCTTTAACAGACTGTATTTGATGAAGGCATTGCACGAGGATTCATAA 1113 0.4474 MRKGWCKRERDEEGRSTFLRCLDSSFPGTLQNMANTMARSFLQVAATEEAAPPLRVIQMEGLVILKIIKHCKDHSPTLVTGQLLGLDVGSVLEVTNCFPFPIREEDEETEADGANYQLEMMRCLREVNVDNNTVGWYQSTLLGSFQTVELIETFMNYQENIRRCVCIIYDPSRSDQGVLALKALKLSDAFMELYRSNNITGEKLREKNLSWVDIFEEIPIKVSNSALISAFMTKLEPDTPVTQCDYDRLQLSTSSLMERNMEFLIECMDDLSMEQQKFQFYYRSLSRQQAQQQAWLQKRRAENMARKAAGEEPLPEEDPSNPAFKPLPEPSRLDSFLITNQIANYCNQINGVSGQSFNRLYLMKALHEDS 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2710 370 ProSiteProfiles MPN domain profile. 57 190 IPR037518 -
Glsi12g2710 370 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 56 158 IPR000555 GO:0005515|GO:0008233|GO:0008237
Glsi12g2710 370 Hamap Eukaryotic translation initiation factor 3 subunit H [EIF3H]. 52 369 IPR027524 GO:0003743|GO:0005737|GO:0005852
Glsi12g2710 370 CDD MPN_eIF3h 55 318 IPR027524 GO:0003743|GO:0005737|GO:0005852
Glsi12g2710 370 MobiDBLite consensus disorder prediction 301 329 - -
Glsi12g2710 370 Pfam C-terminal region of eIF3h 176 368 IPR045810 -
Glsi12g2710 370 SMART pad1_6 56 189 IPR000555 GO:0005515|GO:0008233|GO:0008237
Glsi12g2710 370 FunFam Eukaryotic translation initiation factor 3 subunit H 36 245 - -
Glsi12g2710 370 Gene3D Cytidine Deaminase, domain 2 28 245 - -
Glsi12g2710 370 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED 43 353 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2710 120 369 Eukaryotic Initiation Factors Gene Family AT1G10840 82.800 7.83e-155 434