Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2692 ATGGCGTTCCTTCCCCAACCTCAAGAAGGCGAAGAAGACACCAACGTCGACGTCCACACCACCCGCGGCACTCCCATTCGCTATCTTCCTCTCGATCATCTCTATTCTGCTACATCACCTTGCCGTGTCAGCGCCAGCGGTTCTTCCAACGTCATGTCGAAGAAGGTCAAGGCTCGCAAGCTCAATCTTACCCACTTCGAAGTCGATCCTGATCAGAAGAATTCACTTTCTAAGCCACCCCTTGTTCACGTATACTCTCGCCGCCACAAGAGGCCCCGGCATTCGTCGGAAAGCTTATCGTTTTATGATTCTTTGGTGGGCCGGGGTGGGCTCGCCTCGGATATTTGTAAAATTGACGATTCTGGGGAGGACCGGGAGAACGGCAATTCTGAGTTGGGGAGGTTGCTCAAGAAGAGGAAACCTGGGAGCACTGAGTTGGTGAAATTGGGGGTGGATTTGAGCGCATTGGGCAGTCTTGACGGACCTCGGTTGAGGGACTGCCGTAATCCTAGTGGTGGTGATATTACTAATTGTGACACTAGTAGGAAGGGAAAGCGCACTCCTTTAGAAAATTTCCCAAAGCTATTGTCTGCATCCCGCACTGTAAAGAGATGGGTCAGGTTGAGTTTTGATAATGCTGATCCCGAGACATTTGTTGGATTACGATGCAAGGTTTATTGGCCCATGGATTTAAGATGGTACCTTGGTTGTGTCATAGGTTATGATTCAGAAACTAAGATACATCATGTGAAATATGAAGATGATGATGAAGAGTACTTAATTCTTTCAAATGAGACAATAAAATTCCATGTTTCCCGTGAGGAGATGAAGCATTTAAACTTGAGTTACTACAAAGCTACTGACAGTAACATTTCTGATTATGATGCTGAAGAGTTGCTTGCCTTGGCTGCAAGTTTGGATAATTGCCAAGACTTTGAGCCAGGGGAAGTCATATGGGCCAAACTAACAGGTCATGCGATGTGGCCAGCTGTTGTTCTGGATGAATCACTTGCTGGCAACTGTAGAGGTCTAAAATTGTTTTCAGGAGGAAGATCAGTTCCCGTGCAATTCTTTGGCACCCATGACTTTGCAAGGGTTAGACTGCAGCAGGTGAAATCATTTCTCATTGGTCTTCTTACTGATCTACACTTGAAGTGCAAGAAATCTCATTTTGTTGAAGGATTAGAAGAGGCAAAAATGTATTTAAGTGAACAGAAGCTTCCTTATGAGATGCTACGATCGCAGAAAGGATGTATGGCTGACGTCTGTAAAAATGTACATGAAGAGGATGAAGGATGTACAGATTCAGGTGAAGAATGTTTAGATGACAGATGGACTCTGACAGCATTGGAAAACAATGAAACTTCTCCTTATGTATTTGGAGATTTGAAAATTATAACCCTTGGAAAAATTGTTGAAGATTCCGAAAATTTCCATGATGGAAGTGGAACCTGGCCAGAGGGATACATGGCAGTGAGGAAATTTACTTCAATTACTGACCCAAAATTATGTACCTCATATAAGATGGAGGTGTTGAGAGATCCAGAGTCAAAGATTCGACCGTTATTTAGAGTGACACTGGATAGTGGAGAGCAGTTCAATGGTCCTACAGCATCTGCTTGCTGGAATAAAATATACAAAAGGATCAAGAAAATGGAAAGGGGTGTTTCAGAAGTTTCTGTTGCAGAAGGTGGGCTTGAAAGGGACTATAAATCTGGTTCTGATATGTTTGGTTTCTCCAATCCTGATGTAGCTAAACTTATACAGGGATTATCTAAATCCAGAAATACTCCCAAAAGCTTAATGAGCAAGTTAGGTTCTGGAAAATATAGTGACCTTCCTGTGGGTTATAGGCAGGTTCATATTGATTGGTTTGACCTAGATAAGTGCAATGTGTGTCACATGGATGAGGAGTACGAGAACAATCTGTTTCTGCAGTGTGACAAATGCAGAATGATGGTCCATGCAAGATGTTATGGAGAACTAGAACCTTCCAATGGAGTGCTATGGTTGTGCAACTTATGTCGTTCGGGTGCTCCCTCTCCGCCACCTTGCTGCTTGTGTCCACTCATAGGAGGTGCAATGAAGCCTACAACGGATGGGCGATGGGCTCATTTGGCATGTGCCATGTGGATACCTGAAACGTGCCTAGCTGATGTCAAGAGAATGGAGCCCATTGATGGGATAAGTAGAATCAGCAAGGACCGCTGGAAGTTGTTATGTAGCATATGTGGTGTACCTTATGGTGCCTGCATCCAGTGTTCAAACAATTCTTGTCGAGTAGCATATCATCCACTTTGTGCACGCGCCGCTGGTCTCTGTGTTGAGCTTGAGAATGAGGACAGGCTTTATCTACTTTCTGTTGATGATGATGAAGATCAGTGCATTCGCTTACTTTCTTTCTGCAAGAAACATAGGCATCCATCTTTTGAACATTCGGTCGCCGATGAGCGTATTGGGCGAGTTGCCAGTCAATGTTCGGACTATAAACCACCACCCAACCCATCTGGTTGTGCTCGCAGTGAGCCATACAATAACTTTGGCAGGAGAGGACGAAAAGAACCTGAAGCACTTGCAGCTGCATCCTTGAAGCGCTTGTTTGTAGAGAATCAACCTTACTTAGTTGGTGGATATTGCCAGCATGGCCTGTCAAACAATGTAGAGCCATCTGGCAGGGGAGTTTGCTCTAAATTCTTTTGTAGCCAGCAAAGGCTGAAAACCTCTCTGGTTGATGCTTTAAATGGCATACTTTCTATTGCTGAGAAATATAAGTATATGAGGGACACCTTTCGGAAACGGCTAGCATTTGGGAAATCAAGAATTCATGGATTTGGCATCTTTGCAAAGCATCCATTTAAAGGCGGGGACATGGTAATTGAATACACTGGTGAACTTGTGAGACCTCCCATTGCTGACCGGAGAGAGCACTTTATATATAATTCATTGGTGGGTGCTGGAACATACATGTTTCGGATTGATGATGAACGAGTCATTGATGCTACTAGGGCAGGAAGCATTGCTCATTTAATTAATCATTCTTGTGTACCAAATTGCTATTCAAGAGTTATCAGTGTTAATGGCGATGAGCATATAATAATATTTGCAAAGAGAGACATTAAACAATGGGAAGAGCTTACATATGATTATAGGTTTTATTCAATTGATGAACGACTAGCTTGTTATTGCGGCTTCCCAAGATTGGAGAGGAGAATGAGAGTTTTTGTCCTAAAGTTATGA 3237 0.4347 MAFLPQPQEGEEDTNVDVHTTRGTPIRYLPLDHLYSATSPCRVSASGSSNVMSKKVKARKLNLTHFEVDPDQKNSLSKPPLVHVYSRRHKRPRHSSESLSFYDSLVGRGGLASDICKIDDSGEDRENGNSELGRLLKKRKPGSTELVKLGVDLSALGSLDGPRLRDCRNPSGGDITNCDTSRKGKRTPLENFPKLLSASRTVKRWVRLSFDNADPETFVGLRCKVYWPMDLRWYLGCVIGYDSETKIHHVKYEDDDEEYLILSNETIKFHVSREEMKHLNLSYYKATDSNISDYDAEELLALAASLDNCQDFEPGEVIWAKLTGHAMWPAVVLDESLAGNCRGLKLFSGGRSVPVQFFGTHDFARVRLQQVKSFLIGLLTDLHLKCKKSHFVEGLEEAKMYLSEQKLPYEMLRSQKGCMADVCKNVHEEDEGCTDSGEECLDDRWTLTALENNETSPYVFGDLKIITLGKIVEDSENFHDGSGTWPEGYMAVRKFTSITDPKLCTSYKMEVLRDPESKIRPLFRVTLDSGEQFNGPTASACWNKIYKRIKKMERGVSEVSVAEGGLERDYKSGSDMFGFSNPDVAKLIQGLSKSRNTPKSLMSKLGSGKYSDLPVGYRQVHIDWFDLDKCNVCHMDEEYENNLFLQCDKCRMMVHARCYGELEPSNGVLWLCNLCRSGAPSPPPCCLCPLIGGAMKPTTDGRWAHLACAMWIPETCLADVKRMEPIDGISRISKDRWKLLCSICGVPYGACIQCSNNSCRVAYHPLCARAAGLCVELENEDRLYLLSVDDDEDQCIRLLSFCKKHRHPSFEHSVADERIGRVASQCSDYKPPPNPSGCARSEPYNNFGRRGRKEPEALAAASLKRLFVENQPYLVGGYCQHGLSNNVEPSGRGVCSKFFCSQQRLKTSLVDALNGILSIAEKYKYMRDTFRKRLAFGKSRIHGFGIFAKHPFKGGDMVIEYTGELVRPPIADRREHFIYNSLVGAGTYMFRIDDERVIDATRAGSIAHLINHSCVPNCYSRVISVNGDEHIIIFAKRDIKQWEELTYDYRFYSIDERLACYCGFPRLERRMRVFVLKL 1078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2692 1078 CDD Tudor_Agenet_AtEML-like 219 269 - -
Glsi12g2692 1078 Pfam F/Y rich C-terminus 520 596 IPR003889 GO:0005634
Glsi12g2692 1078 PANTHER PHD FINGER PROTEINS 39 1067 - -
Glsi12g2692 1078 MobiDBLite consensus disorder prediction 1 20 - -
Glsi12g2692 1078 SUPERFAMILY SET domain 930 1065 IPR046341 -
Glsi12g2692 1078 Gene3D SET domain 879 1073 IPR046341 -
Glsi12g2692 1078 SUPERFAMILY Tudor/PWWP/MBT 308 412 - -
Glsi12g2692 1078 ProSiteProfiles FYR domain FYRC motif profile. 518 604 IPR003889 GO:0005634
Glsi12g2692 1078 Gene3D - 303 412 - -
Glsi12g2692 1078 SUPERFAMILY FYVE/PHD zinc finger 620 693 IPR011011 -
Glsi12g2692 1078 ProSiteProfiles Zinc finger PHD-type profile. 627 678 IPR019787 -
Glsi12g2692 1078 SMART PWWP_4 312 375 IPR000313 -
Glsi12g2692 1078 Pfam PHD-finger 642 676 - -
Glsi12g2692 1078 CDD PHD_ATX1_2_like 629 675 IPR042010 -
Glsi12g2692 1078 SMART PHD_3 629 676 IPR001965 -
Glsi12g2692 1078 SMART PHD_3 740 806 IPR001965 -
Glsi12g2692 1078 ProSiteProfiles FYR domain FYRN motif profile. 455 514 IPR003888 GO:0005634
Glsi12g2692 1078 FunFam Histone-lysine N-methyltransferase 680 808 - -
Glsi12g2692 1078 SMART set_7 932 1056 IPR001214 GO:0005515
Glsi12g2692 1078 ProSitePatterns Zinc finger PHD-type signature. 630 675 IPR019786 -
Glsi12g2692 1078 Pfam SET domain 943 1049 IPR001214 GO:0005515
Glsi12g2692 1078 CDD ePHD_ATX1_2_like 691 805 IPR041956 -
Glsi12g2692 1078 CDD SET_SETD1-like 920 1065 - -
Glsi12g2692 1078 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 622 676 IPR013083 -
Glsi12g2692 1078 Gene3D - 216 268 - -
Glsi12g2692 1078 Gene3D - 456 596 - -
Glsi12g2692 1078 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 677 808 IPR013083 -
Glsi12g2692 1078 CDD PWWP_AtATX1-like 313 408 - -
Glsi12g2692 1078 ProSiteProfiles PWWP domain profile. 314 377 IPR000313 -
Glsi12g2692 1078 SMART fyrn_3 470 514 IPR003888 GO:0005634
Glsi12g2692 1078 SMART fyrc_3 522 616 IPR003889 GO:0005634
Glsi12g2692 1078 ProSiteProfiles Extended PHD (ePHD) domain profile. 682 806 IPR034732 -
Glsi12g2692 1078 Pfam PWWP domain 315 402 IPR000313 -
Glsi12g2692 1078 Pfam PHD-zinc-finger like domain 684 805 - -
Glsi12g2692 1078 Pfam F/Y-rich N-terminus 461 511 IPR003888 GO:0005634
Glsi12g2692 1078 ProSiteProfiles SET domain profile. 932 1050 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2692 Glsi-ChrGlsi12 40464659 40481735 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2692 591 776 C2H2 Transcription Factor Family AT3G14740 37.368 4.74e-27 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Glsi12g2692 zf-HC5HC2H_2 1.9e-33 CL0390