Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2683 ATGTACCCTTCTTCATCCTCCTCCTCCTCCCAAAATTCCATCACCCAAAGCGGGCTCACCCGCTACGGTTCTGCCCCAGGATCCCTCTTAACCAACGCCGTCGATGCCGTCGTCGGAGGGACTGACCGGGAATTCTCTGCTGCTATCGGCTCACGCCCTCCGGTGGGCCATTTCTTCTCCGGCGACTCTTCCGAGTCTACCTGCAAAGTCAATTCATCCCCCTCCGATCCAAAAGAGCAGCCCAGAGGCGGCTTGCAGAGATCGTATGGACTCCAAGACGGAAACGTTGGCTATGGTGGCTCTTCTTCGGCTTTGCTCCGTCAGAGAAGCTCGCCGGCTGGCTTCCTCGGCCATCTTACTGCTACTCAGGCTGACAATGCAGGCTTCTCAATTTCAAGGGGCAGTGGAGGCTACAGCTCACAAGGAGTATCTAATAGTGGCCATGGGGTATCAAGGTTGAAATCCCAATTGAGCTTCACAGGCCAAGAATCTCTTTCTCAGATATCGGAGGTGAGCGAAAATGTTGTCGATGGAATCAGTTCTGACAATGGCCATCATAGAGCCGCTCATTCATATGCTACAACTAGCTTTGGAATAGACACGTGGGATAATTCAAACTCCATTGTGTTTTCTGCTCCACCAAGTAAACGTGCTAAGAGTATAGATGGAGACATTCTAAACTGTCTAAATGCCTTGGAATCTCAGTTTAGTCTGCCACAAACAACTCTGGAAATGGCAACGGTGGAGAAGCTACTTAATATTCCTGAAGATTCTGTCCCTTGTAAAATCCGTGCTAAGCGAGGATGTGCTACTCATCCAAGAAGCATTGCAGAACGGGAGAGAAGAACTCGAATAAGTGGCAAGCTGAAGAAATTACAAGAGTTAGTGCCCAATATGGACAAGCAAACAAGCTATGCAGACATGCTGGATTTGGCTGTTCAACATATCAAAGGCCTACAAAGTCAAGTTCAGAACTCGAGAATTGCAGCTGTGGATGTAAACAAAGCTCATAATGTTTTTTTGACAAGATGCTATGGCAGAACAGCGTCCATAGAATTCAAGGATTCTGACAGCAAAGAATCAACTGATTTTGTACCTTATCAACTATAA 1110 0.4748 MYPSSSSSSSQNSITQSGLTRYGSAPGSLLTNAVDAVVGGTDREFSAAIGSRPPVGHFFSGDSSESTCKVNSSPSDPKEQPRGGLQRSYGLQDGNVGYGGSSSALLRQRSSPAGFLGHLTATQADNAGFSISRGSGGYSSQGVSNSGHGVSRLKSQLSFTGQESLSQISEVSENVVDGISSDNGHHRAAHSYATTSFGIDTWDNSNSIVFSAPPSKRAKSIDGDILNCLNALESQFSLPQTTLEMATVEKLLNIPEDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQELVPNMDKQTSYADMLDLAVQHIKGLQSQVQNSRIAAVDVNKAHNVFLTRCYGRTASIEFKDSDSKESTDFVPYQL 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2683 369 Gene3D - 266 329 IPR036638 GO:0046983
Glsi12g2683 369 MobiDBLite consensus disorder prediction 48 93 - -
Glsi12g2683 369 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 272 327 IPR036638 GO:0046983
Glsi12g2683 369 MobiDBLite consensus disorder prediction 1 27 - -
Glsi12g2683 369 CDD bHLH_AtbHLH_like 274 327 IPR045239 -
Glsi12g2683 369 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 25 326 - -
Glsi12g2683 369 SMART finulus 275 325 IPR011598 GO:0046983
Glsi12g2683 369 Pfam Helix-loop-helix DNA-binding domain 274 320 IPR011598 GO:0046983
Glsi12g2683 369 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 269 319 IPR011598 GO:0046983
Glsi12g2683 369 MobiDBLite consensus disorder prediction 60 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2683 Glsi-ChrGlsi12 40387538 40394719 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2683 18 325 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05805 50.291 1.90e-87 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi12g2683 HLH 5.2e-09 No_clan