Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2682 ATGGTGAACCTCATGGAATGGCAGAACCACCACCACCACCACCACCACCAGAACAGAGAGTTGCAGCAGAGTGGGAATGTTAATGGGAACGGAGGAATGATGTATGTCAAGGTGATGACTGATGATCAATTGGAAACTCTCAGGCAACAAATCGCTGTTTATACCACCATCTGCGAGCAACTCGTTGAGCTCCACAAGACACTCACTGCTCAGCAGGATCTTGCAGGAGTTAGGCTGGGAAATATATACTGTGACCCATTGATGACTTCTGCTGGCCACAAAATAACTTCTAGACAGAGGTGGACTCCAACACCAGTGCAACTTCAAATTCTTGAGCGTATATTTGATCAGGGAAATGGAACTCCAAGCAAGCAAAAGATCAAGGAGATTACTGCTGAACTGAGCCAGCATGGCCAAATTTCTGAAACAAATGTCTATAACTGGTTCCAGAATAGGCGTGCTCGATCAAAAAGAAAACAGCAAAATGTGGCTACGAATAACACTGAATCAGAAGTAGAGACTGAAGTTGAGTCATCCAAAGATAAGAAGACAAAACCCGAGGATCTCCAGTGCCAACATAGCGCAACTACCAGGGCTGAAGAATTGTGCTTCCAGAACCCTGAAGTATGCTCTGACTTGCACTACTTGAATCCAGAGTCCAGTAAACCAGAATCCATGTTCCCATCAGATGGCAGTTTAAAATCTACAAGAAGTTTTGGCCAAATGTCTGTTTTTGATGGGATGCTATCAAACTCAAGGGATGGCTATATCGGTGGAAAAATGCAAGTGCCAGGAAGCTACAATCTATACCAGCAAGCAGGAGACTACAACATGACAGAGTTGTGGGGTTGTTGGGCCTGTCTTGAAACGAAAGCAAATTATCCAATGAAAACATGGGAACTTACAAATCTTGATTTAGCGTTCTTGTATAATAGAATTGCAGAAACTTTTGACTGGAGAATGGCATATAAGTTTGACATTATATTGTGA 990 0.4303 MVNLMEWQNHHHHHHHQNRELQQSGNVNGNGGMMYVKVMTDDQLETLRQQIAVYTTICEQLVELHKTLTAQQDLAGVRLGNIYCDPLMTSAGHKITSRQRWTPTPVQLQILERIFDQGNGTPSKQKIKEITAELSQHGQISETNVYNWFQNRRARSKRKQQNVATNNTESEVETEVESSKDKKTKPEDLQCQHSATTRAEELCFQNPEVCSDLHYLNPESSKPESMFPSDGSLKSTRSFGQMSVFDGMLSNSRDGYIGGKMQVPGSYNLYQQAGDYNMTELWGCWACLETKANYPMKTWELTNLDLAFLYNRIAETFDWRMAYKFDIIL 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2682 329 Pfam Homeodomain 98 158 IPR001356 GO:0003677
Glsi12g2682 329 CDD homeodomain 98 160 IPR001356 GO:0003677
Glsi12g2682 329 ProSiteProfiles 'Homeobox' domain profile. 94 159 IPR001356 GO:0003677
Glsi12g2682 329 SMART HOX_1 96 163 IPR001356 GO:0003677
Glsi12g2682 329 Gene3D - 100 166 - -
Glsi12g2682 329 MobiDBLite consensus disorder prediction 156 188 - -
Glsi12g2682 329 MobiDBLite consensus disorder prediction 1 27 - -
Glsi12g2682 329 PANTHER WUSCHEL-RELATED HOMEOBOX 13 5 278 IPR044559 GO:0003700
Glsi12g2682 329 SUPERFAMILY Homeodomain-like 96 161 IPR009057 -
Glsi12g2682 329 MobiDBLite consensus disorder prediction 173 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2682 Glsi-ChrGlsi12 40383259 40386434 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2682 4 279 Wox Gene Family AT4G35550 53.691 1.91e-92 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Glsi12g2682 Homeodomain 1.8e-18 CL0123