Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2680 ATGCGAGCCATCAGGCACCACTTTTCAGTGTTCAATTGGAGACCTTCTACTTCTAAAGCAACCCCAGCTGCTGCCCCACTCTTGTCGCTACGAAATATTATGTCGGAATCGCATCAATCCTCTGTTTTTGACACACCTAGATTGGTTCTCAAGAAGGTCTTAGCAAAATCTCAACAAGAAGGCGATGGAGCTGTCGTTAGAAGAGGCATTGGAAGAAGCGAGTTGAAGAGTTTGGATCCTTTTCTGATGTTGGATCACTTCTCAGTGTCTCCACCTGGAGGTTTTCCTGATCATCCACACAGAGGTTTTGAGACTGTCACATACATGCTGCAGGGAGCCATAACTCATCAAGATTTTGCTGGGCACAAGGGTACAATAAGAACAGGTGATGTTCAGTGGATGACAGCGGGCAGAGGAATAATTCACTCAGAAATGCCAGAAGGAGAAGGAACCCACAAGGGATTGCAGCTGTGGATCAATTTATCTGCTGAAGATAAGATGATTGAACCAAATTATCAAGAACTTTTGAGCGATGACATACCAGTAGCAGAGAAAGATGAGGTTGAAGTGAGGGTCATAGCAGGAGAAGCAATGGGAGTTCACTCACCTGTTTACACTCGAACTCCAACCATGTTCCTTGATTTCTCTCTCAGGCCCGGAGCTCAATTGCATCAAAGCATTCCAGAGTCATGGAACTCCTTTGTCTATGTGATTGAAGGAGAAGGGGTTTTTGGGTCCCTAAGTTCATCAACAGTAACGGCTCACCATGTCCTGGTTATGAGTCTAGGAGATGGTCTAAGCGTCTGGAATAGGTCTTCAAAGCCTCTGAGGTTTGTGCTGATCGCAGGTCAGCCACTTAATGAGCCAGTGGCTCAGTATGGACCCTTTGTGATGAACACACAATCTGAGATCGAAAAAACTATCGAGGACTATCACTATTGCAAGAATGGGTTTGAGATGGGCAAATATTGGAGATCTCAATAG 984 0.4522 MRAIRHHFSVFNWRPSTSKATPAAAPLLSLRNIMSESHQSSVFDTPRLVLKKVLAKSQQEGDGAVVRRGIGRSELKSLDPFLMLDHFSVSPPGGFPDHPHRGFETVTYMLQGAITHQDFAGHKGTIRTGDVQWMTAGRGIIHSEMPEGEGTHKGLQLWINLSAEDKMIEPNYQELLSDDIPVAEKDEVEVRVIAGEAMGVHSPVYTRTPTMFLDFSLRPGAQLHQSIPESWNSFVYVIEGEGVFGSLSSSTVTAHHVLVMSLGDGLSVWNRSSKPLRFVLIAGQPLNEPVAQYGPFVMNTQSEIEKTIEDYHYCKNGFEMGKYWRSQ 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2680 327 FunFam pirin 60 196 - -
Glsi12g2680 327 CDD cupin_pirin_N 64 161 - -
Glsi12g2680 327 Pfam Pirin 67 159 IPR003829 -
Glsi12g2680 327 CDD cupin_pirin_C 209 285 - -
Glsi12g2680 327 SUPERFAMILY RmlC-like cupins 47 325 IPR011051 -
Glsi12g2680 327 Gene3D Jelly Rolls 181 286 IPR014710 -
Glsi12g2680 327 Pfam Pirin C-terminal cupin domain 212 317 IPR008778 -
Glsi12g2680 327 PANTHER PIRIN-RELATED 34 326 IPR012093 -
Glsi12g2680 327 PIRSF Pirin 45 325 IPR012093 -
Glsi12g2680 327 Gene3D Jelly Rolls 60 312 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2680 Glsi-ChrGlsi12 40371862 40373684 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2680 45 322 Calmodulin-binding Proteins AT3G59220 65.714 7.24e-136 385