Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2665 ATGCAGCTCAATCGTCTCTGCCTTATTTTACCAGCAGATTCTGATGAAATTGAGCTTCCACGAGTCAATCAATCTGCACAGAAAGAACCCAAGATCAAACACCCTCGCCGAGCTTGTGGGGGTCAAATTCTTGCCTTTCTTCGTCACTCTCTCTGCAAGTTATATGACTCAAGGTGTTTGAACTTTTGCGACTATGAAGTGGGAAAAAGGAAGAAAAGCTCGGGTTTGTTTCAAGACACGGCTGGTGTACAACTCTCTGCCAAGATTGGGAGGGACAACCCAAGGATTTTCAGCTATGCTGAGCTTTTCATAGGGTCTAATGGTTTCAGTGAGGATTATGTTCTGGGGAGTGGAGGGTTTGGCAAAGTGTACAAGGCTGTTTTGCCAAGTGATGGAACAGTGGTTGCTGTGAAATGCTGCTTAGCAGAGAAAGGGCAGCAATTTGAGAAAACTTTCGCAGCAGAGTTATCAGCCGTGGCCCATCTTCGCCACAAGAACCTTGTCAAGCTGAGGGGGTGGTGCGTTCATGAAGATCAACTCTACCTGGTTTATGATTACATGCCTAACCTTAGCCTGGATCGCATACTCTTCCGCAGGCCCGAGACCTTGAATGCAGAGCCTCTTGATTGGGAAAGGCGTGGAAAAATTGTCAGGGGTCTGGCAGCTGCATTGTATTATCTCCATGAACAATTAGAAACACAAATCATTCACAGGGATGTGAAAACCAGCAATGTGATGCTTGATTCCCAATATAATGCGCGGTTGGGCGACTTTGGCTTGGCAAGGTGGCTAGAACATGAGCTTGAGTACCAAACTAGGAAAACATCAAACAAATTTGACCCTTTCAGGTTGGCGGAGACAACAAGAATTGGTGGCACAATTGGGTATTTGCCCCCTGAAAGCTTCCAAAAGAGAAGCATTGCTACTTCCAAATCTGATGTCTTCAGCTTTGGGATAGTTGTATTGGAAGTGGCATCTGGAAGGAGAGCGATTGATCTTACATACCCAGATGATCAAATCATTTTGCTTGACTTCATCAGAAGGCTATCTGATGAGGAAAAGCTCCTGGAGGCCGGGGATACTCGGCTACCAGATGGTTCCTACAAGCTTTCTGAGATGGAGCACTTACTTCACATAGGCCTGCTCTGCACACTCCATGAGCCACAGTCCCGGCCTAGCATGAAATGGATTGTAGAAGCATTATCTAACATTTCAAGCCAATTACCAGCTCTTCCTTCTTTCCATTCCCACCCACTGTATATCTCTTTATCTTCCCCATCGGAGACTAGTCCTAGCAGCACAAACGCCACTAGCTCTGTCACAGATAATGTTAGCACCATCACCAATTATTCTTCATCCAACTATGTCACAGCCAACGGGAAAACTATATACATGACTGCTGAAGACAGAAACAGCGAAATTTTTTCTGCTAAGAGCCTGCATCATCACCCAGCATTTCCTGTGGTTGAAACTCCAAGGGAGATATCATACAAGGAGATTGTCTTGGCTACAGATAATTTTTCAGAGTCGAGGAAGGTAGCAGAGATAGACTTTGGAACTGCCTACCATGGCGTCCTTGAAGACCGTTACCATGTCATGGTGAAACGCCTTGGCATGAAGACATGCCCGGCATTGCGCCGAAGATTCTCTAATGAACTACGGAACTTAGCAAGGCTTCGCCACCGGAATTTGGTGCAGCTCCGTGGATGGTGCACTGAACAAGGGGAGATGCTTGTTGTGTATGATTACTCAGCTAAGAGAATTCTGAGTCACCAGCTTTTCCATCATAACAATCATAGAAATGGGTATTCTGTCCTGCAATGGCATCAGAGATACAATATAGTGAAGTCACTTGCTTCAGCCATTCTCTATCTTCATGAGGAATGGGATGAACATGTGATTCATAGGAACATCACCTCTTCAGCTGTCATCCTTGAACCAGATATGAACCCAAGACTCAGCTGTTTTGCCCTGGCTGAATTTTTGACCAGGAATGAGCATGGTCATCATGTAATCACTGACACTAGCAACTCCGTTCGTGGGATTTTTGGCTACATGTCACCGGAATCTATGGAATCCGGTGAAGCAACCGCAGCAGCTGATGTTTATAGTTTTGGTGTGGTGATGCTTGAAGTTATCAGTGGACAGATGGCAGTGGACTTTCGGCAGCCTGAGGTGCTGTTGGTGAAGAAGGTTCATGAATTTGAGATAAGAAAAAGACCACTGGAGGAATTAGTAGACATGAGGCTCAACGAAGAGTACAATTACAAAGAACTTATTAGAATGGTAAAATTAGGAATTGCATGCACTCGATCTAACCCACAATTAAGGCCAACCATGAGACAAATAGTAGGCATCCTTGACGGCAATGACAGATTAATCATGGAAGAAAACCAGAAGGAGAGCAGAGAAGAATGGAAACAAAAGAATGCTTGCTCTTTGTCATTGATTAAGAGAATCCAAGCACTAGGTATACAGTGA 2481 0.449 MQLNRLCLILPADSDEIELPRVNQSAQKEPKIKHPRRACGGQILAFLRHSLCKLYDSRCLNFCDYEVGKRKKSSGLFQDTAGVQLSAKIGRDNPRIFSYAELFIGSNGFSEDYVLGSGGFGKVYKAVLPSDGTVVAVKCCLAEKGQQFEKTFAAELSAVAHLRHKNLVKLRGWCVHEDQLYLVYDYMPNLSLDRILFRRPETLNAEPLDWERRGKIVRGLAAALYYLHEQLETQIIHRDVKTSNVMLDSQYNARLGDFGLARWLEHELEYQTRKTSNKFDPFRLAETTRIGGTIGYLPPESFQKRSIATSKSDVFSFGIVVLEVASGRRAIDLTYPDDQIILLDFIRRLSDEEKLLEAGDTRLPDGSYKLSEMEHLLHIGLLCTLHEPQSRPSMKWIVEALSNISSQLPALPSFHSHPLYISLSSPSETSPSSTNATSSVTDNVSTITNYSSSNYVTANGKTIYMTAEDRNSEIFSAKSLHHHPAFPVVETPREISYKEIVLATDNFSESRKVAEIDFGTAYHGVLEDRYHVMVKRLGMKTCPALRRRFSNELRNLARLRHRNLVQLRGWCTEQGEMLVVYDYSAKRILSHQLFHHNNHRNGYSVLQWHQRYNIVKSLASAILYLHEEWDEHVIHRNITSSAVILEPDMNPRLSCFALAEFLTRNEHGHHVITDTSNSVRGIFGYMSPESMESGEATAAADVYSFGVVMLEVISGQMAVDFRQPEVLLVKKVHEFEIRKRPLEELVDMRLNEEYNYKELIRMVKLGIACTRSNPQLRPTMRQIVGILDGNDRLIMEENQKESREEWKQKNACSLSLIKRIQALGIQ 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2665 826 Gene3D Phosphorylase Kinase; domain 1 81 186 - -
Glsi12g2665 826 ProSiteProfiles Protein kinase domain profile. 507 793 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g2665 826 ProSitePatterns Protein kinases ATP-binding region signature. 115 138 IPR017441 GO:0005524
Glsi12g2665 826 Pfam Protein tyrosine and serine/threonine kinase 511 785 IPR001245 GO:0004672|GO:0006468
Glsi12g2665 826 SUPERFAMILY Protein kinase-like (PK-like) 487 787 IPR011009 -
Glsi12g2665 826 ProSiteProfiles Protein kinase domain profile. 109 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g2665 826 PANTHER - 86 403 - -
Glsi12g2665 826 FunFam Receptor like protein kinase S.2 83 186 - -
Glsi12g2665 826 Gene3D Transferase(Phosphotransferase) domain 1 187 408 - -
Glsi12g2665 826 SMART serkin_6 109 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g2665 826 SMART serkin_6 507 794 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g2665 826 FunFam Receptor like protein kinase S.2 187 407 - -
Glsi12g2665 826 Gene3D Phosphorylase Kinase; domain 1 468 583 - -
Glsi12g2665 826 Pfam Protein kinase domain 111 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g2665 826 Gene3D Transferase(Phosphotransferase) domain 1 589 814 - -
Glsi12g2665 826 SUPERFAMILY Protein kinase-like (PK-like) 94 440 IPR011009 -
Glsi12g2665 826 FunFam Receptor like protein kinase S.2 585 811 - -
Glsi12g2665 826 ProSitePatterns Serine/Threonine protein kinases active-site signature. 235 247 IPR008271 GO:0004672|GO:0006468
Glsi12g2665 826 FunFam Receptor like protein kinase S.2 467 583 - -
Glsi12g2665 826 CDD STKc_IRAK 518 789 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2665 Glsi-ChrGlsi12 40178200 40180680 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2665 493 788 Receptor kinase-like Gene Family AT5G55830 35.000 7.33e-48 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Glsi12g2665 Pkinase 6.1e-43 CL0016