Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2663 ATGGCATCAACATCTTGTGTCAGCAAGACTCCATTCCCCGCAGCTTCGAACTATCGTCCGTATCCTCCACCTCTCTCAAAATATGAGGACGTTGCTGCTAGTCCCAAGCTCTTTATGTTTACCTTGGAGCAGCTCCACACTTCTATGGGTACCAAGTTCATGATCCCCATAATAGGAGGAAGAGAACTAGATTTGCATCGGCTTTTTGTGGAAGTGACTTCTCGTGGTGGCATTGAGAAGATTCTTAGAGAGAGAAGATGGAAAGAAATAACTGCTGTTTTCAATTTTCCATCTACAGCTACAAATGCTTCTTTTGTGTTGCGGAAGTACTATGCTTCATTGCTTTACCACTATGAGCAAATATACTATTTTAAGATCCACGGATATATCCCTAACACTCCTGATGCTTTGCAGAGTCAAACTTCCATGCCAGTTCCTGCTCAAAGAACGCAATTTTTGCATCATCTGGGTAATGCTGCTGAATTGCCTGAAGGATCTCCAGTCATTGGGGTCATTGATGGGAAATTTGAGAGTGGGTATCTTGTTACTGTTACAATAGGTTCAGAGAAACTTAAAGGAGTACTATATCAGGCCCCAATCCCGGGACTTCCAGCATCACAACCAAATAGTGTTTTACTTAATTACAATAATACCTCTCCTTCACTGGGTGTCCATCGTCGCCGGCGAAAGAAATCCGAGATAAAAAGGAGAGATCCTGCTCATCCAAAACCCAACAGAAGTGGGTACAATTTCTTCTTTGCAGAGCAGCATGCAAGACTCAAACCACTTCACCATGGGAAGGACAGAGAAATCAGTAGAATGATTGGTGAACTCTGGAACAAATTAAAAGAGCCAGAGAAAGCAGTTTATCAAGAGAAGGCTGTTAAAGATAAAGAGAGGTACAGAGCAGAAATGGAGGATTATAGGGAGAAACAGAAGACAGGTCATGTAATCAGTGACGCTGTGCCTTTGCAGCAACGACTTCCTGAACCCGATGCAGATATGATGGATGCTGACTTAAAAATGGATGAAAATGAGGGTGGAGATTCTCCTCAAACACCTGATGAGAGCAGCTCCGGTGAAAGTGACTACGAAGATGATAAAGCTCCAGAGCACAATTTGGATTTGGATGCATGTCCTGGAATAGGAGTGGGTGCTGAATCTAGATATCTGGGTTTAGAGAAGTCATCCAAGGAGGTGGGTGATGAGTTCCAGAAGAAAGAAGGGGATGCTGAAGATCAACAGGTTCAAAAGATGGATGAGAGCAAAAGTATGCTAGAATTAGTTTAG 1290 0.4302 MASTSCVSKTPFPAASNYRPYPPPLSKYEDVAASPKLFMFTLEQLHTSMGTKFMIPIIGGRELDLHRLFVEVTSRGGIEKILRERRWKEITAVFNFPSTATNASFVLRKYYASLLYHYEQIYYFKIHGYIPNTPDALQSQTSMPVPAQRTQFLHHLGNAAELPEGSPVIGVIDGKFESGYLVTVTIGSEKLKGVLYQAPIPGLPASQPNSVLLNYNNTSPSLGVHRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLHHGKDREISRMIGELWNKLKEPEKAVYQEKAVKDKERYRAEMEDYREKQKTGHVISDAVPLQQRLPEPDADMMDADLKMDENEGGDSPQTPDESSSGESDYEDDKAPEHNLDLDACPGIGVGAESRYLGLEKSSKEVGDEFQKKEGDAEDQQVQKMDESKSMLELV 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2663 429 MobiDBLite consensus disorder prediction 397 429 - -
Glsi12g2663 429 SUPERFAMILY ARID-like 30 124 IPR036431 GO:0003677
Glsi12g2663 429 SUPERFAMILY HMG-box 230 313 IPR036910 -
Glsi12g2663 429 Coils Coil 291 311 - -
Glsi12g2663 429 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 13 361 - -
Glsi12g2663 429 FunFam High mobility group B protein 15 26 139 - -
Glsi12g2663 429 ProSiteProfiles ARID domain profile. 32 123 IPR001606 GO:0003677
Glsi12g2663 429 Pfam HMG (high mobility group) box 242 309 IPR009071 -
Glsi12g2663 429 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 242 309 IPR009071 -
Glsi12g2663 429 SMART bright_3 33 124 IPR001606 GO:0003677
Glsi12g2663 429 MobiDBLite consensus disorder prediction 332 348 - -
Glsi12g2663 429 Gene3D - 24 128 IPR036431 GO:0003677
Glsi12g2663 429 FunFam High mobility group B protein 15 224 319 - -
Glsi12g2663 429 MobiDBLite consensus disorder prediction 214 249 - -
Glsi12g2663 429 Pfam ARID/BRIGHT DNA binding domain 36 119 IPR001606 GO:0003677
Glsi12g2663 429 CDD HMG-box_AtHMGB9-like 242 308 - -
Glsi12g2663 429 Gene3D High mobility group box domain 226 320 IPR036910 -
Glsi12g2663 429 SMART hmgende2 241 310 IPR009071 -
Glsi12g2663 429 MobiDBLite consensus disorder prediction 397 420 - -
Glsi12g2663 429 MobiDBLite consensus disorder prediction 306 384 - -
Glsi12g2663 429 PRINTS High mobility group (HMG1/HMG2) protein signature 293 313 - -
Glsi12g2663 429 PRINTS High mobility group (HMG1/HMG2) protein signature 274 293 - -
Glsi12g2663 429 SMART ARID_2 29 119 - -
Glsi12g2663 429 CDD ARID_HMGB9-like 34 119 IPR045303 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2663 Glsi-ChrGlsi12 40162994 40167963 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2663 1 342 ARID Transcription Factor Family AT1G04880 60.753 1.73e-135 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Glsi12g2663 ARID 7.3e-18 CL0123