Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2662 ATGGATGACAAATTTCCCAAGAAGGAAATCTTCATGCAAAAGGAATTGTCCACTTGTTTTAAAGAAATGGCAATGGGATCAAAGTTTTTGGACAATCCAATTATTAGAGGTTCTCAGACTCTCACTACTTCTCAACACATTCATGTATTAAGGGGGGTGGATTCATCAATAGCATCATCATCTGAAAAGCTTCTTTCAATTTCAGACATGTCAACAGTAGAAGAGCTATCTGGGGCCACCTTGATTAGTCATCTCCCTCCAAGGTTCACAGATCAAGAGGAAATTACCAAAGTGCAACGGAAAAATCAACTCAATTCCATTTGTACTGCTCCTAATGCTTCAGCCTCTGGAACCAATGAAAGCTTCATTCCTTTAAATCTGTTGGAAACGCTTCCAGCATTACCCAGAGCACACACATCTGATGAGCCAGCTTCTCCAGCTTCTTCAACTGCTACATCTAGATTCCCATATTTGACTTTGTTTTTGCAGGAACCCTCTATGTTGTTTTCATCATCCTCAAAGATCACTGAATCACTTGGCAAGCCCAAAACTTGTGAAGCTATATCAGCAACTTCAGACCCTTCATTTTCTGTGTCCCAGTTTGATCCAAATCAGTATCAAACAGGTAGAAATACAATCAAAATGAATCAGAATCTTAAAAATCTCCGGTCCAAGTCTTTTAATGACAATTGGTTAAGCCCTACCAAGACTCAGCCTATGAAATATGCTGGACGAGGTAAGCTGTTCAAAGGGGTGAGGCAAAGACACTGGGGAAAATGGGTAGCAGAGATTAGGTTACCAAGGAATAGGACAAGGGTTTGGCTAGGGACATTTGACACAGCTGAAGATGCCGCCATTGCTTATGACACAGCAGCCTACATACTACGCGGAGAATATGCTCAACTGAACTTTCCAGATCTAAAGCATCATATTAAGGCCAATTCTTTGAATGGAACAACTGCTGCCCTTCTGGAGGCAAAGCTACAAGCAATATCCAAAGGTATTTCTTCTCAAAGAATGTCCACTGATTCCCTGCCTGGGTCATTGAATAAGCACACAGTTCAGAATGCCAAATTGAATAATAAAGGCCAGAAATCAGCTATAAAAGAATGGAAATTTGAGGTAGAGAGCCAACCAGGAGTTGATACAATTGAGAGAAGCAAAAATAATCAAGAGATATCAGATGTGGAAGCTATTCAGTTAAGTAGAATGCCCTCCTTAGACATGGACATCATTTGGGATTCCCTTTTAGTCTCTGAATCATGA 1266 0.4052 MDDKFPKKEIFMQKELSTCFKEMAMGSKFLDNPIIRGSQTLTTSQHIHVLRGVDSSIASSSEKLLSISDMSTVEELSGATLISHLPPRFTDQEEITKVQRKNQLNSICTAPNASASGTNESFIPLNLLETLPALPRAHTSDEPASPASSTATSRFPYLTLFLQEPSMLFSSSSKITESLGKPKTCEAISATSDPSFSVSQFDPNQYQTGRNTIKMNQNLKNLRSKSFNDNWLSPTKTQPMKYAGRGKLFKGVRQRHWGKWVAEIRLPRNRTRVWLGTFDTAEDAAIAYDTAAYILRGEYAQLNFPDLKHHIKANSLNGTTAALLEAKLQAISKGISSQRMSTDSLPGSLNKHTVQNAKLNNKGQKSAIKEWKFEVESQPGVDTIERSKNNQEISDVEAIQLSRMPSLDMDIIWDSLLVSES 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2662 421 ProSiteProfiles AP2/ERF domain profile. 248 305 IPR001471 GO:0003700|GO:0006355
Glsi12g2662 421 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 110 416 - -
Glsi12g2662 421 SMART rav1_2 248 311 IPR001471 GO:0003700|GO:0006355
Glsi12g2662 421 Gene3D AP2/ERF domain 248 306 IPR036955 GO:0003700|GO:0006355
Glsi12g2662 421 PRINTS Ethylene responsive element binding protein signature 249 260 IPR001471 GO:0003700|GO:0006355
Glsi12g2662 421 PRINTS Ethylene responsive element binding protein signature 271 287 IPR001471 GO:0003700|GO:0006355
Glsi12g2662 421 SUPERFAMILY DNA-binding domain 248 306 IPR016177 GO:0003677
Glsi12g2662 421 CDD AP2 247 307 IPR001471 GO:0003700|GO:0006355
Glsi12g2662 421 FunFam Ethylene-responsive transcription factor 2 247 306 - -
Glsi12g2662 421 Pfam AP2 domain 249 297 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2662 Glsi-ChrGlsi12 40156795 40158060 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2662 105 416 AP2-EREBP Transcription Factor Family AT4G13620 42.462 9.04e-68 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi12g2662 AP2 2e-12 CL0081