Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2655 ATGGCTTCGTCTTTGGAGAAGCTTCTTGCAGAGGAAGGGTTCAAAGCAAGTAGAAGAATGATAAGGTCGAGATCTTCCTTGCAGTCTGATGCTGAATCTGGGCCACGTTACTCTTTCCGCAGCCAACAAAAGAGACTTTCTGTATCATGTGAAAGAATTAAAACAGAGATAACGAAGTCTGATGTATCGCAATATCAGAGTAGAGGTGAATTACTGAATAGTGATGCTGGTAAGAGCATGAGACCAAGGGATAGTCTTTCTAAAAGAGAAAAAATGGATGAACGAGTGAAGAATGGAAATGAGGAGAAACCTTCAAGCAATACAGAGCCAGGTAAAGGATTTGATATCAATTCATTAGAAAATATGTCAAGATGTGAGATAATTGAGGTGAGTCAGCAAGAAGATAACAGAGTTGCAGATATATATTCAAATGAATCCTCTGAGACAAAGAGGGGGAAAGAGAAGAATTTAAATGAGTTTAAACAGAAGGAAAAATGGCGAGAAATGCCCATTAAGGATGCAAAGGAGGATAAGAGGCATGTCATCAGTTCCAATTTAAATATGCTTGGACATTTCAGTGGAAAAACAAAGACGAATACAAAAGGACAGGGGAACTCCCAAAATAGATCTAACAGCAAAAGCTTTGAAGATAGTTATAAAAAACAAGCATCTTCTCAGCTACCTCTTGATGAAGTTGCTGTCCAAGCAATAATTTCCATTCTAAATGGATATATAAAACGTTTTCTAAAAGATGCGAAATTTCGGACTACACTGCATCACAACTGTTTCTCCTCCTTGAATTTTATTGAACTGGAAGAAGAGAACAGTAATGAGACCAAAGTAATAAGAAGTTTTGAACAAGCAACTGAGACAATAGAACAAGCGGCCGAGGAGTATGTACCTTCCAAAGATTTGAAAAGAGCCTCAATGCAGCTAAGCATTATTACAGGTTTGAGTTTAAATGATTTGAAATATGGGTTTACATGTGGGATTCCGAATTATAAATTGTCAGCCTGTGGTCATCTTTACCTTAGTGTGGCCTATAAGATACAGAAAAAAGATAAGGTGTCAGCAAAGCATCTTTTGCAAGTGTTTTGTGACTCACCTTTTCTGGCACGGACAACATTGTTGCCTGAACTGTGGGAGTATCTGTTTTCCCCACATCTTTCCCATTTGAAGGCATGGTATAATAGGGAAGTTGATATTCTAGCAGATAGGCCAAGCAGAACAAGGAAACTGAATCTTATCCAAAAAGTTTATAATGAACATTTGGATTCTGGAACTTATATCTTTGCTGTATACTACAAAGACTGGCTCACTGAAGGAGTAGAAGCTCCATCTATTCCTTCTATCAGAATTCCATCAATCTCTATCTCAGAAAGTCAGCAGGGAAGTTCACTTGGTCATTCTTCGGAGTTTTGTAGCTCCACTGATCCATTCTCACCAAAACCAATGTTAAGCAAAAAACTCTATGATTCTGTTTTTGGTAGCTTGAGTAAGCCTGGAAATGATGAAGATGAAGATAATGTGGAGGATAATAACCTTGATACTTGTGTGAGAGGTTCTCGTGGTTCAGCTATGGTTAAACAAACATTAATATATGCATCTGAAATGGTTAAATATACTGATCAAGATGTTGAAGAAGATTTCACTAAGAATATTCCAGTTGTTGCATTGCATCCTAAAGGAATCTCAATGATAAATGAAGAACAAAGAGAAAAAAATAGCAGTGATGACATCGGTTACTCTTTCATACCCCAACAAACTAATGTATATAGCCACTTGTTAGATTCTAGAAGATATGAACTTACTCTTGGAAAAGCAACAAGATCTGATTCGGAAATGGAAAACAACAAAAGCTCTTTTGATCCCACTGTTTCACAGTCCAGTAAGGAATTAGTCTCCAACTCTTTTGCAAATCAAATTAAGATAAGTTCTTCTCTTGAAGAGGTAAATGGACTACATAAACTTTTTTATGCAGGATTACATTTTCCAACCATTCCACAGGAGTTTATTTGTCCTCTAACTGGAAATCTGTTTGAGGAACCAGTCACTATAGAGACCGGACAAACCTTTGAACGGGCAGCCATCATGACATGGTTTGAAAAGGGACATAGAACATGTCCAGTAACAGGAGCTTCTTTAGATTGTGTGGCCATGCCACTAACCAACCTTGTTTTGAAGCGTTTGATTCATAATTGGAAGTCAGAACATTTAGATCGTCTCCCGGATTCTGCTTATCAAATCTTGGAAAATTCAAGAGAACCTAAGTTAAAACATAGGGATGAGATTGCAGTTTTCAAATTAGAGAGTATTTTCACTTCGTTAAATGAAGAGGACAAAACAACTTATGCCAGGCATCTCATCTCCTTAGGGGTTTTAGCATTTCTTCTGAGGAGATTTGAATTGGGAAATTTGGAAGAGAAAACACATGTGATGGCACTCTTGATAAATTGTATTGAAGCAGATTCTTGTTGCATATATCAAATAGCAAGAGATATGAACAAAAAATGTCTTCTTGAGCTTCTTCTGAGCAAGGAGGTTACTCCAAGAAAAAACACAATATTATTGCTTACTGAACTTTTAGCACTGAAGAGAAGAAAGGATGTTACATCTTTCTTAAGTGGCTTGAAGGGTGAAGATGTATTTATTACGATGCATGTTCTGCTCATGTATCTCAAGAATTCTCCACCACGTCAAAAACCCCTGATTGCTGTCCTTTTGTTGCACTTTGATCTACTGGTTGAGCCTCAAAAGTATAGCATATACAGAGAGCAGGCTGTGAATTCCATTGCAGTGGCTCTTGATGCCAGCTTAAATGATGGGAAGGTCCGTGAAAATTGTTGCAGAGCACTTTTAATCTTGGGAGGGCATTTTTCGTCAACTGGAAAGATACTGACCAAGAATAGCATTTTAAAGCAAGCAGGATATAAATCTGATATTTCAGAAGTCAAAACTCCTGACGACGAGGAAGAGGAAGAGGGTTTATTATGGGATGGGGCCATTTCATTGGAAGATGAAGAAGAAAGGAGCGAAAAGTGGTTGGTGAACTTGTTAGAATCAATGATTGGTGATGGAGAAAGCCCATTTTTGAAGACTATTTCGAGATGTTTAGACTCTAGACACCCAGATTTGGTCAGGATATGTCTAATAACTGTTGCATGGTTGAGCTCCTCACTTTCTTCAGTATGTAATGCTGGATTACCCCTTGCTGCCTTCTTAGCAATCATCTCTCAGATGAAAGGAGTCCTGGAAAATGGAGAACTTGAACTCAAGACTCTTGTTTCTATGTCCTTGCTTAATTTCAGCAAAATATCAGAATGCAGAACTCTTTTGATGACTATGGCAGAAGATATTGCTGCTTCTCTTCATAGACTCGCTGATGTAACATGGACCGCAAAGCAGCTGCATGCCATCGTTTCTGGGGAGGATCTATAA 3438 0.3807 MASSLEKLLAEEGFKASRRMIRSRSSLQSDAESGPRYSFRSQQKRLSVSCERIKTEITKSDVSQYQSRGELLNSDAGKSMRPRDSLSKREKMDERVKNGNEEKPSSNTEPGKGFDINSLENMSRCEIIEVSQQEDNRVADIYSNESSETKRGKEKNLNEFKQKEKWREMPIKDAKEDKRHVISSNLNMLGHFSGKTKTNTKGQGNSQNRSNSKSFEDSYKKQASSQLPLDEVAVQAIISILNGYIKRFLKDAKFRTTLHHNCFSSLNFIELEEENSNETKVIRSFEQATETIEQAAEEYVPSKDLKRASMQLSIITGLSLNDLKYGFTCGIPNYKLSACGHLYLSVAYKIQKKDKVSAKHLLQVFCDSPFLARTTLLPELWEYLFSPHLSHLKAWYNREVDILADRPSRTRKLNLIQKVYNEHLDSGTYIFAVYYKDWLTEGVEAPSIPSIRIPSISISESQQGSSLGHSSEFCSSTDPFSPKPMLSKKLYDSVFGSLSKPGNDEDEDNVEDNNLDTCVRGSRGSAMVKQTLIYASEMVKYTDQDVEEDFTKNIPVVALHPKGISMINEEQREKNSSDDIGYSFIPQQTNVYSHLLDSRRYELTLGKATRSDSEMENNKSSFDPTVSQSSKELVSNSFANQIKISSSLEEVNGLHKLFYAGLHFPTIPQEFICPLTGNLFEEPVTIETGQTFERAAIMTWFEKGHRTCPVTGASLDCVAMPLTNLVLKRLIHNWKSEHLDRLPDSAYQILENSREPKLKHRDEIAVFKLESIFTSLNEEDKTTYARHLISLGVLAFLLRRFELGNLEEKTHVMALLINCIEADSCCIYQIARDMNKKCLLELLLSKEVTPRKNTILLLTELLALKRRKDVTSFLSGLKGEDVFITMHVLLMYLKNSPPRQKPLIAVLLLHFDLLVEPQKYSIYREQAVNSIAVALDASLNDGKVRENCCRALLILGGHFSSTGKILTKNSILKQAGYKSDISEVKTPDDEEEEEGLLWDGAISLEDEEERSEKWLVNLLESMIGDGESPFLKTISRCLDSRHPDLVRICLITVAWLSSSLSSVCNAGLPLAAFLAIISQMKGVLENGELELKTLVSMSLLNFSKISECRTLLMTMAEDIAASLHRLADVTWTAKQLHAIVSGEDL 1145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2655 1145 PANTHER OS04G0584500 PROTEIN 1 1143 - -
Glsi12g2655 1145 MobiDBLite consensus disorder prediction 81 102 - -
Glsi12g2655 1145 Pfam U-box domain 667 738 IPR003613 GO:0004842|GO:0016567
Glsi12g2655 1145 SMART Ubox_2 670 734 IPR003613 GO:0004842|GO:0016567
Glsi12g2655 1145 MobiDBLite consensus disorder prediction 144 159 - -
Glsi12g2655 1145 MobiDBLite consensus disorder prediction 138 159 - -
Glsi12g2655 1145 CDD RING-Ubox_PUB 668 727 IPR045210 -
Glsi12g2655 1145 SUPERFAMILY RING/U-box 663 738 - -
Glsi12g2655 1145 ProSiteProfiles U-box domain profile. 666 741 IPR003613 GO:0004842|GO:0016567
Glsi12g2655 1145 MobiDBLite consensus disorder prediction 59 117 - -
Glsi12g2655 1145 MobiDBLite consensus disorder prediction 13 45 - -
Glsi12g2655 1145 MobiDBLite consensus disorder prediction 59 73 - -
Glsi12g2655 1145 MobiDBLite consensus disorder prediction 608 628 - -
Glsi12g2655 1145 SUPERFAMILY ARM repeat 784 1109 IPR016024 -
Glsi12g2655 1145 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 666 740 IPR013083 -
Glsi12g2655 1145 MobiDBLite consensus disorder prediction 188 219 - -
Glsi12g2655 1145 MobiDBLite consensus disorder prediction 21 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2655 Glsi-ChrGlsi12 40038929 40047621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2655 667 781 U-box Gene Family AT5G42340 34.783 2.49e-15 79.0