Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2652 ATGGACGTTGGAGGAGGTCGCAAGAGGGGAAGGTTTGAAGCTGCCTTTAACGGTAATGGCGGCGTTAAGAAATCCAGGCCAGAAATGGAGTCCTTTCCAACTGGTTTAGGAAGCAAATCAAAGCCATGCACAAAGTTTTTCAGCACCTCTGGCTGTCCATTTGGTGAGGGATGTCATTTCTTGCATTACGTTCCGGGTGGCATCAAAGCTGTTTCTCAGATGATTAACGTTGGTAGCAACCCTGCTGTTCCACAACCTGGTAGAAATTCGACAGTTCCATCGTCCTTCTCAGATGGCTCTTCTCCAGCTGTTAAAACCCGATTGTGCAACAAGTTTAATTCGGCTGAAGGTTGCAAATTTGGTGATAAATGCCACTTTGCCCATGGTGAGTGGGAGCTTGGCAAGCGTTCAGTTCCATCATATGAAGATCCTCATGCCCTAGGACAAATGCAAAGCAGGGTTGGTAGGCGGGTTGAGCTCCCGGCTCCTGCTCATGGAGCTGCAGCCAGTTTTGGTGCTTCTGCTACTGCTAAGATTAGTATTAATGCTTCACTTGCTGGAGCTATCATTGGGAAAAATGGTGTCCACTCTAAGCAAATTTGTCGCCTGACTGGAGCAAAACTTTCTATCAGGGATCATGATTCAGATCCTAACCTCAAGAACATTGAGCTTGAGGGAAGTTTTGATCAGATCAAGCAAGCAAGTGCAATGGTTCGTGAACTTATTGCGAATGTTGGTTCTGTCTCCGAACCTCCAATGAAAAACATTACAACACATGCTTCTGCCCCAATGAGCAACTTAAAGACTAAGCTATGTGAAAAGTTTGCGAAAGGTTCGTGCACCTTTGGAGAAAGGTGCCACTTTGCACATGGCACAGATGAATTACGCAAGCCTGGGATATAA 903 0.4607 MDVGGGRKRGRFEAAFNGNGGVKKSRPEMESFPTGLGSKSKPCTKFFSTSGCPFGEGCHFLHYVPGGIKAVSQMINVGSNPAVPQPGRNSTVPSSFSDGSSPAVKTRLCNKFNSAEGCKFGDKCHFAHGEWELGKRSVPSYEDPHALGQMQSRVGRRVELPAPAHGAAASFGASATAKISINASLAGAIIGKNGVHSKQICRLTGAKLSIRDHDSDPNLKNIELEGSFDQIKQASAMVRELIANVGSVSEPPMKNITTHASAPMSNLKTKLCEKFAKGSCTFGERCHFAHGTDELRKPGI 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2652 300 CDD KH-I_AtC3H36_like 178 242 - -
Glsi12g2652 300 Gene3D K Homology domain, type 1 170 262 IPR036612 GO:0003723
Glsi12g2652 300 SUPERFAMILY CCCH zinc finger 38 63 IPR036855 GO:0046872
Glsi12g2652 300 ProSiteProfiles Zinc finger C3H1-type profile. 103 131 IPR000571 GO:0046872
Glsi12g2652 300 FunFam Zinc finger CCCH domain-containing protein 261 297 - -
Glsi12g2652 300 MobiDBLite consensus disorder prediction 1 34 - -
Glsi12g2652 300 PANTHER CCCH ZINC FINGER/TIS11-RELATED 42 298 IPR045877 GO:0003729
Glsi12g2652 300 FunFam Zinc finger CCCH domain-containing protein 99 135 - -
Glsi12g2652 300 ProSiteProfiles Type-1 KH domain profile. 174 238 - -
Glsi12g2652 300 Gene3D - 98 135 - -
Glsi12g2652 300 Gene3D - 263 297 - -
Glsi12g2652 300 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 166 245 IPR036612 GO:0003723
Glsi12g2652 300 SUPERFAMILY CCCH zinc finger 103 133 IPR036855 GO:0046872
Glsi12g2652 300 Pfam KH domain 177 240 IPR004088 GO:0003723
Glsi12g2652 300 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 105 130 IPR000571 GO:0046872
Glsi12g2652 300 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 268 291 IPR000571 GO:0046872
Glsi12g2652 300 ProSiteProfiles Zinc finger C3H1-type profile. 266 293 IPR000571 GO:0046872
Glsi12g2652 300 SUPERFAMILY CCCH zinc finger 265 296 IPR036855 GO:0046872
Glsi12g2652 300 ProSiteProfiles Zinc finger C3H1-type profile. 37 65 IPR000571 GO:0046872
Glsi12g2652 300 Pfam RNA-binding, Nab2-type zinc finger 42 62 - -
Glsi12g2652 300 SMART kh_6 173 243 IPR004087 GO:0003676
Glsi12g2652 300 SMART c3hfinal6 103 130 IPR000571 GO:0046872
Glsi12g2652 300 SMART c3hfinal6 266 292 IPR000571 GO:0046872
Glsi12g2652 300 SMART c3hfinal6 37 64 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2652 Glsi-ChrGlsi12 40003079 40012203 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2652 38 135 C3H Transcription Factor Family AT1G68200 26.531 8.94e-06 44.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Glsi12g2652 KH_1 3.5e-10 CL0007