Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2650 ATGATTTCAAGTACAAGGATAAATGGCAACCACGAGGAAACCTCAGATTCTAATAATAATGACGTCATAAACTTTGCATTTCCTGCAGCCAAACGAGCGAGGCATGAAGAACACGAGAATAATAACGCAATATTTTTGCACAAGTTCAAAGGCGTTGTGCCTCAGCAAAATGGGCATTGGGGTGCCCAAATATACGCAAACCACCAAAGAATCTGGCTGGGAACCTTCAAATCCGAAAGAGAAGCAGCCATGGCATATGATAGTGCCACCATCAAACTTCGAAGTGGTGAAAGCCATAGGAATTTCTCATGGAATGATCTTACAGTTCAAGAGCCTCATTTTCAAAGCCATTTCACCACGGAAGCAGTGCTTAGCATGATCAGAGATGGCACCTACCCGTCCAAGTTTGCTTCATTTCTTAGGGCCGGAACCCAAACCCAAGAAGAAGATGGCAATATTGCTGGAACTAGCAAGCAAAGAAGGGTGAATAGTAATAGTGGTGAGGAAGAGTTCTCTTGCACCCAACTTTTTCAGAAGGAACTAACCCCAAGTGATGTGGGCAAGCTCAATAGGCTTGTCATCCCAAAGAAGCACGCAAGCAGGTATTTTCCTTACGTTTCTGGCAATGAAGAAGAGAATAATAATAATATGAATAATGGCATGGATGGTGGGATTTGCGACACTGAGCTTGTGTTTTATGACAAGCTCATGAGGTCTTGGAAATTTAGGTACTGCTATTGGAGGAGCAGCCAGAGTTTTGTGTTCACAAGGGGTTGGAACAGGTTCGTGAAGGATAAGAGTTTAAGGGCTAAAGACATTATTGCATTTTATAAGTGTGAGCCTATGAATATTAGGGGAAAAGGGGGGGAAGTATTTTCCTTGATTGATGTAATCTATAACGAAGATGATCAGAGAAGGAATCATTGTTTTGGAGAGAGGAAGGGAGATTTCAAACAAAGTTTTGGAAATATGTTGAGTTTCAATGGAGCAGAAGAAGAAGATGGAGGAGATCATGACGAGACCAAGGATGAACTGCAGGAATTGAATTCACAGCATGTAACGCATGATGAACAAAAATGTTTGAGGCTTTTCGGTGTAAGAATCAACTGA 1110 0.418 MISSTRINGNHEETSDSNNNDVINFAFPAAKRARHEEHENNNAIFLHKFKGVVPQQNGHWGAQIYANHQRIWLGTFKSEREAAMAYDSATIKLRSGESHRNFSWNDLTVQEPHFQSHFTTEAVLSMIRDGTYPSKFASFLRAGTQTQEEDGNIAGTSKQRRVNSNSGEEEFSCTQLFQKELTPSDVGKLNRLVIPKKHASRYFPYVSGNEEENNNNMNNGMDGGICDTELVFYDKLMRSWKFRYCYWRSSQSFVFTRGWNRFVKDKSLRAKDIIAFYKCEPMNIRGKGGEVFSLIDVIYNEDDQRRNHCFGERKGDFKQSFGNMLSFNGAEEEDGGDHDETKDELQELNSQHVTHDEQKCLRLFGVRIN 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2650 369 Pfam AP2 domain 48 94 IPR001471 GO:0003700|GO:0006355
Glsi12g2650 369 SMART B3_2 177 288 IPR003340 GO:0003677
Glsi12g2650 369 Coils Coil 338 358 - -
Glsi12g2650 369 FunFam AP2 domain-containing protein RAP2.8 47 104 - -
Glsi12g2650 369 SUPERFAMILY DNA-binding domain 48 104 IPR016177 GO:0003677
Glsi12g2650 369 SUPERFAMILY DNA-binding pseudobarrel domain 175 283 IPR015300 -
Glsi12g2650 369 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 48 368 IPR044800 GO:0003700
Glsi12g2650 369 ProSiteProfiles B3 DNA-binding domain profile. 177 298 IPR003340 GO:0003677
Glsi12g2650 369 CDD AP2 48 105 IPR001471 GO:0003700|GO:0006355
Glsi12g2650 369 CDD B3_DNA 176 277 IPR003340 GO:0003677
Glsi12g2650 369 MobiDBLite consensus disorder prediction 1 21 - -
Glsi12g2650 369 ProSiteProfiles AP2/ERF domain profile. 48 103 IPR001471 GO:0003700|GO:0006355
Glsi12g2650 369 SMART rav1_2 48 109 IPR001471 GO:0003700|GO:0006355
Glsi12g2650 369 MobiDBLite consensus disorder prediction 147 166 - -
Glsi12g2650 369 Gene3D - 172 300 IPR015300 -
Glsi12g2650 369 Pfam B3 DNA binding domain 177 277 IPR003340 GO:0003677
Glsi12g2650 369 Gene3D AP2/ERF domain 47 104 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2650 Glsi-ChrGlsi12 39991669 39992778 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2650 48 297 RAV Transcription Factor Family AT1G51120 62.016 3.19e-105 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Glsi12g2650 B3 8.9e-24 CL0405