Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2629 ATGGTGGAGGAATCTTCTACCCTCATTTGTATGCAGGAACCAGGAACACTTCTCGAGTACTCACTGAATGCAGTCACTGAAGGCATAGATGCAATTGCCACTACCCGTGTTCTAATTCGCGGGGAAAAAAGTCATACTTCTACTCATGCTTTAACAGGAGAAACAGCTCATCGGACATTCAGTGGGTCTGGGGCAAGCATGGACATTATTGTATCCAGTGTCAAGGCTTATATTGTTGCACTGAACAAGATGTTGGGTTTCAAAGAAACATATAGATCAGCTGAAAGAACCATGGCACATGCTTCTTCTCCTAGTCACTTTGTTCGCCTGGAGAATACAATTTCCAAAGACGACCTATATTTGAGGAAGAAGAGCGGGATGCGTCGGTGGCTTTGTTGTACTTGTCAGGCTGAAGAGTCTTATCCCTCAAATGAAACTGAGATCCTAAAAAGCCCAAGGAATTATGGAGATGGCAACCAAAAAGGCTCAAAGGTGGTAGCTCCTGTCAAACCTGAAACACAAAAGGCTGCACCACCCATTGAAGTGCCAGCATTAGCTTTAGATGAACTGAAGGAAAAGACTGAAAACTTTGGATCAAAGGCATTGATTGGTGAAGGATCTTATGGAAGAGTTTATTATGCAACTTTAAATGGTGGAAAAGCTGTAGCTGTGAAAAAGCTTGATGTTTCATCTGAAGCTGAATCCAATGTGGAGTTTTTGACCCAGGTTTCCATGGTCTCAAGAATGAAGCATGAAAATTTTGTCGAGTTGCATGGTTACTGTGTTGAAGGAAATCTTCGTGTACTTGCATATGAGTTTGCAACTATGGGTTCTCTTCATGACATATTGCATGGTAGGAAGGGAGTTCAAGGAGCACAACCAGGGCCAACACTTGACTGGATGCAGCGAGTAAGAATTGCTGTTGATGCTGCAAGAGGGTTGGAATATTTGCATGAGAAAGTTCAACCGTCTATTATACACAGAGATGTCAGATCAAGCAATGTACTTATTTTTGAAGATTACAAAGCGAAAATAGCTGATTTTAACCTTTCAAATCAAGCCCCTGACATGGCTGCACGCCTTCATTCCACTCGAGTGTTGGGAACTTTTGGTTATCATGCTCCAGAGTATGCAATGACTGGTCAGTTGACTCAAAAAAGCGATGTCTACAGTTTTGGTGTTGTTCTTCTTGAGCTTCTGACAGGAAGAAAACCTGTTGATCATACTATGCCTCGTGGACAGCAAAGTCTTGTTACATGGGCTACCCCAAGATTGAGTGAAGATAAAGTTAAACAATGCGTAGATCCTAAACTGAAGGGAGAATATCCTCCTAAAGGAGTCGCAAAGCTGGCAGCTGTTGCAGCACTATGTGTGCAGTATGAAGCCGAATTTAGGCCAAATATGAGCATCGTTGTTAAAGCACTGCAACCACTTCTGAAGACTCCTGCTCATGCGCCTGAAAAACTTGAAGCTAATTAA 1479 0.4253 MVEESSTLICMQEPGTLLEYSLNAVTEGIDAIATTRVLIRGEKSHTSTHALTGETAHRTFSGSGASMDIIVSSVKAYIVALNKMLGFKETYRSAERTMAHASSPSHFVRLENTISKDDLYLRKKSGMRRWLCCTCQAEESYPSNETEILKSPRNYGDGNQKGSKVVAPVKPETQKAAPPIEVPALALDELKEKTENFGSKALIGEGSYGRVYYATLNGGKAVAVKKLDVSSEAESNVEFLTQVSMVSRMKHENFVELHGYCVEGNLRVLAYEFATMGSLHDILHGRKGVQGAQPGPTLDWMQRVRIAVDAARGLEYLHEKVQPSIIHRDVRSSNVLIFEDYKAKIADFNLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLTQKSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSEDKVKQCVDPKLKGEYPPKGVAKLAAVAALCVQYEAEFRPNMSIVVKALQPLLKTPAHAPEKLEAN 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2629 492 ProSitePatterns Protein kinases ATP-binding region signature. 203 226 IPR017441 GO:0005524
Glsi12g2629 492 Pfam Protein tyrosine and serine/threonine kinase 202 475 IPR001245 GO:0004672|GO:0006468
Glsi12g2629 492 ProSiteProfiles Protein kinase domain profile. 197 479 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g2629 492 Gene3D Transferase(Phosphotransferase) domain 1 275 489 - -
Glsi12g2629 492 SMART tyrkin_6 197 475 IPR020635 GO:0004713|GO:0006468
Glsi12g2629 492 FunFam PTI1-like tyrosine-protein kinase 3 159 273 - -
Glsi12g2629 492 SUPERFAMILY 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 17 84 IPR036230 -
Glsi12g2629 492 Gene3D - 7 85 IPR036230 -
Glsi12g2629 492 SUPERFAMILY Protein kinase-like (PK-like) 178 475 IPR011009 -
Glsi12g2629 492 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 130 483 - -
Glsi12g2629 492 ProSitePatterns Tyrosine protein kinases specific active-site signature. 325 337 IPR008266 GO:0004672|GO:0006468
Glsi12g2629 492 SMART LeuA_dimer_2 1 85 IPR013709 GO:0003852|GO:0009098
Glsi12g2629 492 FunFam PTI1-like tyrosine-protein kinase 3 275 484 - -
Glsi12g2629 492 Pfam LeuA allosteric (dimerisation) domain 13 85 IPR013709 GO:0003852|GO:0009098
Glsi12g2629 492 Gene3D Phosphorylase Kinase; domain 1 162 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2629 Glsi-ChrGlsi12 39824645 39831121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2629 131 476 Receptor kinase-like Gene Family AT4G02010 45.845 1.65e-91 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Glsi12g2629 PK_Tyr_Ser-Thr 6.9e-47 CL0016