Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2617 ATGAATTTTTGTTTTGTTCTTGACCCCGAACAAATGGCGCAGAGTAATTGGGAAGCAGATAAGATGCTTGATGTTTATATCTATGATTATTTGGTGAAGAAAAAATTGCATAATACTGCAAAGTCATTCATGACAGAAGGGAAGGTTGCACCAGATCCAGTAGCAATTGATGCTCCTGGAGGGTTTCTTTTCGAGTGGTGGTCTGTCTTTTGGGATATTTTTATTGCAAGGACAAATGAAAAACATTCTGAGTCTGCTGCGGCATACTTGGAGGCTCAACAGATTAAAGCAAAAGAACAACAGCAGCTGCAAATGCAGCAGTTGCAGCTAATGCGTCAAGCTCAGCTTCAAAGAAGGGATCCTAATCATCCACCCCTTGGTGGTCCTGTAAATTCTATTACTACGGAAGGAATGCTTGGGCAATCTACTGCTAGTGCATTGGCTGCTAAAATGTATGAGGAACGGATGAAACACTCTAACACAATGGACACAGAGACATCCCAACCACTTCTAGATGCCAGAATGGCCCTTTTAAAGTCAACAACAAGTCACCCTGGTCAGATGGTTCAAGGAAATTCTGGAAGTGTTACAGCAGCTTTGCAGCACATCCAGGCTCGGACTCAACAAACCCCTGACATTAAAGGTGAAGTCAACATGGGCTCGATACAGAGATCATTGCCCATGGATCCTTCTTCAATTTATGGGCAGGGAGCAATGCAGTCAAAACCTGGAATAGTAAATGCAGGATTGAATCCAGGAGTTGGTGGTCTCACACTGAAAGGATGGCCTTTAACTGTAGATCAAATTCGACCAGGTCTAGGAGCACAAGCTCAAAAGCCTCTTCTTCAGAGTGCAAATCAGTTTCAGCTTTTGCCACAACAACAACAACAACAACTCCTAGCACAGGTTCAGGCACAAGGAAATATCAGCAGTTCACCGATGTATGCAGATATGGATCCTCAACGGTTAAGGGGACTAGCTAGGGGCAGTTTGAATGCAAAAGATGGCCAACCAATGGCAAATGATGGATCAATAGGGTCTCCAATGCAATCCACTTCATCTAAGATGAATGTGCCACAGATCCAACAATCTACCTCTCAGCAACAACAGGATCCTTTGCATCCACAGCAACTGCCACAGAATAGTCGGAAAAGGAAAGGGCCTACGTCTTCTGGAGCTGCCAACAGTACTGGTACAGGAAACACAATCGGCCCTAATTCTCAACCATCAACCCCATCTACTCACACTCCTGGTGATGGAGTAGCTATGGCTGGTAGCTTGCAGAATGTTGGTGGTGCGTCCAAAGGTTTGATGATGTATGGTGCTGAGGGTGCAGGTGGTCTTGCATCGTCCACAAATCAGCTGTTGCAGGATGACATGGAGCGTTTTGGAGATGTTGGCTCCTTAGATGATAATGTAGAATCATTTCTCTCACATGATGATGGTGATGGAAGGGACTTGTTTGGGACATTAAAACGGAACATTTCTGAGCATGCAGCAGATGCTTCAAAAGGCTTCTCCTTCAGTGAAGTTGGTTCCATACGCAAAAGTAACGGCAAAGTTGTTTGCTGCCATTTCTCTTCAGATGGGAAGTTATTGGCCAGTGCTGGACATGACAAGAAGGTTTTTCTGTGGAACATGGAGACACTACAAACAGAGACCACTCCAGAGGAATACAGTCATATTGTTACTGATGTTCGCTTCAGACCTAATTTGTCTCAGTTTGCAACATCTTCATTTGATACGACTGTGAAGCTTTGGGATGCTGCTGATCCAAACTTTTGTTTACAGACATATACTGGTCATACCTCTCATGTGATGTCCCTTGATTTCCACCCAAAGAAAAATGACCTTTTCTGTTCTTGCGATGCTAACAGTGAGATTCGCTTTTGGAATATTAATCAATATCCCTGCACTCGTGTTTCCAAGGGAGGCTCTGCACAGGTAAAGTTTCAGCCAAGGATAGGACTCCTTCTGGCTGCAGCAGCTGGCAATGTTGTGTCCCTCTTTGATGTTGAGACTGACAGGCTGATGCACTCATTTCGGGGACACTCTACGGATGTGCATTCTATTTGTTGGGATAACAATGGAGATTACTTAGCATCTGTGAGTCAAGACTCTGTCAAAGTGTGGTCATTGGCCTCTGGGGAGTGCATTCATGAGCTTAGTTCCAGTGGCAACTTCCATTCTTGTGTTTTTCACCCAAGCTACTCCACTCTCTTGGTTATTGGAGGTTACCAGTCATTGGAGCTATGGAACATGGCCGAGAATAAATGTATGACAATACCAGCTCATGAGTGTGTGATATCAGCTTTAGCACAATCACCAGTGACAGGCATGGTTGCTTCTGCCAGTCATGACAAATCGGTCAAGATTTGGAAATAA 2385 0.444 MNFCFVLDPEQMAQSNWEADKMLDVYIYDYLVKKKLHNTAKSFMTEGKVAPDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSESAAAYLEAQQIKAKEQQQLQMQQLQLMRQAQLQRRDPNHPPLGGPVNSITTEGMLGQSTASALAAKMYEERMKHSNTMDTETSQPLLDARMALLKSTTSHPGQMVQGNSGSVTAALQHIQARTQQTPDIKGEVNMGSIQRSLPMDPSSIYGQGAMQSKPGIVNAGLNPGVGGLTLKGWPLTVDQIRPGLGAQAQKPLLQSANQFQLLPQQQQQQLLAQVQAQGNISSSPMYADMDPQRLRGLARGSLNAKDGQPMANDGSIGSPMQSTSSKMNVPQIQQSTSQQQQDPLHPQQLPQNSRKRKGPTSSGAANSTGTGNTIGPNSQPSTPSTHTPGDGVAMAGSLQNVGGASKGLMMYGAEGAGGLASSTNQLLQDDMERFGDVGSLDDNVESFLSHDDGDGRDLFGTLKRNISEHAADASKGFSFSEVGSIRKSNGKVVCCHFSSDGKLLASAGHDKKVFLWNMETLQTETTPEEYSHIVTDVRFRPNLSQFATSSFDTTVKLWDAADPNFCLQTYTGHTSHVMSLDFHPKKNDLFCSCDANSEIRFWNINQYPCTRVSKGGSAQVKFQPRIGLLLAAAAGNVVSLFDVETDRLMHSFRGHSTDVHSICWDNNGDYLASVSQDSVKVWSLASGECIHELSSSGNFHSCVFHPSYSTLLVIGGYQSLELWNMAENKCMTIPAHECVISALAQSPVTGMVASASHDKSVKIWK 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2617 794 ProSiteProfiles Trp-Asp (WD) repeats profile. 556 588 IPR001680 GO:0005515
Glsi12g2617 794 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 599 634 - -
Glsi12g2617 794 Gene3D - 492 646 IPR015943 GO:0005515
Glsi12g2617 794 ProSiteProfiles Trp-Asp (WD) repeats profile. 762 794 IPR001680 GO:0005515
Glsi12g2617 794 Pfam LisH 21 47 IPR006594 GO:0005515
Glsi12g2617 794 ProSiteProfiles Trp-Asp (WD) repeats profile. 599 641 IPR001680 GO:0005515
Glsi12g2617 794 Gene3D - 647 794 IPR015943 GO:0005515
Glsi12g2617 794 ProSiteProfiles Trp-Asp (WD) repeats profile. 681 721 IPR001680 GO:0005515
Glsi12g2617 794 ProSitePatterns Trp-Asp (WD) repeats signature. 533 547 IPR019775 -
Glsi12g2617 794 SUPERFAMILY WD40 repeat-like 508 794 IPR036322 GO:0005515
Glsi12g2617 794 Pfam WD domain, G-beta repeat 761 794 IPR001680 GO:0005515
Glsi12g2617 794 Pfam WD domain, G-beta repeat 519 546 IPR001680 GO:0005515
Glsi12g2617 794 Pfam WD domain, G-beta repeat 595 632 IPR001680 GO:0005515
Glsi12g2617 794 Pfam WD domain, G-beta repeat 677 712 IPR001680 GO:0005515
Glsi12g2617 794 Pfam WD domain, G-beta repeat 561 588 IPR001680 GO:0005515
Glsi12g2617 794 CDD WD40 510 794 - -
Glsi12g2617 794 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 514 549 - -
Glsi12g2617 794 PRINTS G protein beta WD-40 repeat signature 781 794 IPR020472 -
Glsi12g2617 794 PRINTS G protein beta WD-40 repeat signature 533 547 IPR020472 -
Glsi12g2617 794 PRINTS G protein beta WD-40 repeat signature 575 589 IPR020472 -
Glsi12g2617 794 MobiDBLite consensus disorder prediction 331 427 - -
Glsi12g2617 794 MobiDBLite consensus disorder prediction 343 417 - -
Glsi12g2617 794 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 762 794 - -
Glsi12g2617 794 SMART WD40_4 549 588 IPR001680 GO:0005515
Glsi12g2617 794 SMART WD40_4 592 632 IPR001680 GO:0005515
Glsi12g2617 794 SMART WD40_4 635 671 IPR001680 GO:0005515
Glsi12g2617 794 SMART WD40_4 755 794 IPR001680 GO:0005515
Glsi12g2617 794 SMART WD40_4 507 546 IPR001680 GO:0005515
Glsi12g2617 794 SMART WD40_4 715 753 IPR001680 GO:0005515
Glsi12g2617 794 SMART WD40_4 674 712 IPR001680 GO:0005515
Glsi12g2617 794 Coils Coil 98 118 - -
Glsi12g2617 794 ProSiteProfiles LIS1 homology (LisH) motif profile. 19 51 IPR006594 GO:0005515
Glsi12g2617 794 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 12 794 IPR044716 GO:0003714
Glsi12g2617 794 SMART Lish 19 51 IPR006594 GO:0005515
Glsi12g2617 794 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 556 588 - -
Glsi12g2617 794 ProSiteProfiles Trp-Asp (WD) repeats profile. 514 555 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2617 Glsi-ChrGlsi12 39749659 39766720 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2617 492 754 U-box Gene Family AT2G33340 26.429 7.26e-16 79.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Glsi12g2617 WD40 0.0096 CL0186