Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2614 ATGTTGTCAGATCTTTTCACCGTCCTAAACCCCATCTTGTTTTGCTCCAATTTTGATTCTTCACTACAGCCACCTATGCCTCCAAGTTTTAACGCACTAGACTACTCTCTCGATCATCATCAACAACATCATCAGTTTCCACAAAATCAGCAGAACCTCATGAAGTTTCGGATTGGCGATCAAACTTGTGGGGAAAGCAGTCATGGCGTGGTGGATTATATGCCGAACAATCCTCAGCCACAAATATCTTGTGGGTTTTATGGTGCCACTTCTTTTGACAAGCTGAGTTTTGCAGATGTGATGCAGTTTGCAGATTTTGGACCCAAGTTGGCTTTGAACCAAAGCAAGAATTGTGAAGCTGAAGATTCTGGGATCGACCCAGTTTACTTCCTCAAGTTTCCTGTGTTGAACGATAAGTTGGAGGATCAGAATCTGATGGCGACTGCTGGAGGAGAAGCAGAAAACTTGGAAGATAAATCAAGAGTAGGAGAAGAAGAAGGAGGAGTGAGAGAGGATGAAGAAGCTCGGGTTTCTGATAATAACTCAGTGCAGCTTCGATTTCTTGGCGAGGACATCCAGAAGAACCCTACACAGGAGAACAACAAGAGCAAGAGGAAAAGACCCAGAACCATCAAAACAAGCGAGGAAGTAGAGAGCCAACGTATGACTCACATTGCAGTTGAAAGGAACCGAAGAAAGCAAATGAACGAGCATCTTCGCGTCTTGAGATCCCTTATGCCTGGTTCATACGTCCAAAGGGGGGATCAAGCTTCTATAATAGGGGGAGCTATAGAGTTTGTTAGGGAATTGGAGCAGCTGCTTCAGTGCTTGGAATCACAGAAGAGGAGGAGGCTACTTGGAGAAGCTCATACAAGACAAGTGGGGGATCCTTCCATTGGAATTCAGCAGCCTCCATTTTTTCCGCCATTGCCTTTACCAAATGATCAGCAAATGAAGCTTGTGGAGTTTGAGACCGGGCTCAGGGAAGAAACTGCAGAAAATAAGTCGTGTTTGGCTGATGTGGAAGTGAAGCTCCTGGGATTTGATGCCATGATCAAAATCCTGTCAAGAAGAAGGCCAGGCCAGTTGATTAAAACCATTGCGGCCCTTGAAGATCTACAGCTTATTATCCTTCACACCAACATCACCACTATCGAACAAACTGTTCTTTATTCCTTCAATGTCAAGGTGGCAAGCGATTCAAGGTTCACAGCAGAAGACATAGCGAGCTCTGTGCAACAGATTTTTAGTTTTATTCATGAAAACACCGGAATGTAA 1278 0.4444 MLSDLFTVLNPILFCSNFDSSLQPPMPPSFNALDYSLDHHQQHHQFPQNQQNLMKFRIGDQTCGESSHGVVDYMPNNPQPQISCGFYGATSFDKLSFADVMQFADFGPKLALNQSKNCEAEDSGIDPVYFLKFPVLNDKLEDQNLMATAGGEAENLEDKSRVGEEEGGVREDEEARVSDNNSVQLRFLGEDIQKNPTQENNKSKRKRPRTIKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLLGEAHTRQVGDPSIGIQQPPFFPPLPLPNDQQMKLVEFETGLREETAENKSCLADVEVKLLGFDAMIKILSRRRPGQLIKTIAALEDLQLIILHTNITTIEQTVLYSFNVKVASDSRFTAEDIASSVQQIFSFIHENTGM 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2614 425 Pfam Helix-loop-helix DNA-binding domain 220 271 IPR011598 GO:0046983
Glsi12g2614 425 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 219 287 IPR036638 GO:0046983
Glsi12g2614 425 MobiDBLite consensus disorder prediction 154 179 - -
Glsi12g2614 425 MobiDBLite consensus disorder prediction 148 222 - -
Glsi12g2614 425 MobiDBLite consensus disorder prediction 180 196 - -
Glsi12g2614 425 PANTHER TRANSCRIPTION FACTOR FAMA 123 416 IPR044283 GO:0003700|GO:0010052
Glsi12g2614 425 MobiDBLite consensus disorder prediction 197 222 - -
Glsi12g2614 425 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 219 270 IPR011598 GO:0046983
Glsi12g2614 425 SMART finulus 225 276 IPR011598 GO:0046983
Glsi12g2614 425 FunFam Basic helix-loop-helix transcription factor 210 285 - -
Glsi12g2614 425 Gene3D - 194 285 IPR036638 GO:0046983
Glsi12g2614 425 CDD bHLH_AtFAMA_like 222 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2614 Glsi-ChrGlsi12 39716342 39717973 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2614 58 425 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G24140 63.520 2.12e-153 438
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi12g2614 HLH 9.2e-10 No_clan