Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2609 ATGAACCAGTACCACATATACGAAGCCATTGGTCGCGGCAAATACTCGGTAACATTGTTTGTGATTGTTCGAATTTCAATGATACTGGGCACTGTTTTACTTGGCTGTTTAACTGTGTATAAAGGCAGGAAGAAGAAGACCATTGAATATTTTGCCATTAAGAGTGTTGACAAGTCGCAGAAAAGCAAGGTTCTTCAAGAAGTTAGGATTCTTCACTCTTTAGATCACCAAAATGTACTCAAGTACGAAACTTCTGCTCACCTATGGTTGGTTTTGGAGTATTGTGTTGGAGGAGATCTACTTACCTTATTACGGCAGGATAGTCATCTACCCGAAGATTCAATTCATGATCTTGCTCATGACCTAGTCAAAGCTTTGCAGTATTTACATTCAAGTGGAATAATTTATTGTGACCTGAAACCATCAAATATCTTACTAGATGAAAACGGATGTGCAAAGCTATGTGATTTTGGTTTGGCTAGAAAATTGAGGGATATATCAAAAATTCCTTCTTCCTCGTTGCCACAAGCAAAACGTGGGACACCCTCTTACATGGCTCCGGAGCTTTTTGAGGACGGCGGAGTCCATTCTTATGCTTCTGATTTCTGGGCCCTGGGTTGTGCATTATATGAATGTTATGCAGGGAGACCACCCTTTGTGGGAAGAGAATTCACTCAACTTGTGAAGTCCATCCTTTCAGATCCAATTCCACCACTCCCGGGTAACCCAAGTCGCCTTTTTGTCAATTTGATTAATTCTCTGTTGGTAAAAGATCCAGCTGAAAGAATACAGTGGCCTGAGCTTTGTGGACATGCCTTTTGGGGAACCAAATTAACTCCGGTACCTCTACCTGCTCAACCTGCTTTCAATGATATGATAGAACTGCATGCTAAACCTTGCTTGTCAGAACGCAATGGTGATAAATCTTTCCAGAACAGAACTCCTCCCAAATATCGTGAAAAAGATGTGAGAGGGGTGTTGAGGCAAGATGAGAATTCTGTTGTAGGACCAAGGGGCCATGAGACACCTACTAGGGGTACACCAAATGGCCATAGAACTCAGACAAAGGGTTCTGGCAGAACAGCTGAGGTGAAGCAGAAAGATCCTTCCAATGTTAGCAAGGCTGTGAATCTTTTGAGACTCTCAAGGATAGCAAAATCAAATTTACAGAAGGAAAATGAGAAGGAAAATTACCGACGCCCCATGCCTAATAGCTCTGAGAATGACTCTGAAGTTAAAATTGAGAACACTGATATGGAGCTTGATTTTAATGAAAATACTGAAGATGATGCAAATGATGAAGCTGATGATTCTGATCATTCAGCCTCTGTGACCGATGAGAAAATATCCAATCTAAATCAAAATCAGGGAAAAGCAGAGGAGATGGAAAGTAATATACATCAGTTAGACACCCCATCTGTTGTTAATACACCCCTCTCAGATGATACAAGATCATTTGATCAGGAATCAACTCCTGAGCATCCTGACATGTCTGCTACCTCTCCCAGTGTGAGCCCTCAGGTCAAGAAACACAGAGTGAAAGAAGACTTAGGATCTGCCCTTGACTTTGATTCTTCAAGGTCATCTAGTAACATTTCCCAGGTTCTTTGGCATCAATCTGATCTCTCAGTCAGACCTGTAATGCCCAGCAGAAAAATTGATAAAATGTCAGAAGTCATCCCTTCACTTCCTTTTGAGGCTCTGCACGTGTCTGATTTTGTAAAGATGTCTAAAGAGCAATTGGATGCAGTCCACAACCGAATTATAGCCATTTTCAATGGGAATTCCAGCATTGGGGAGAAACAGAATGTTATTAGATACCTTGAGATGCTGAGCAGTAATGCTGATGCAGCTAATATCTTGACCAATGGGCCAATAATGCTAATGCTTGTAAAATTGCTTCGTCAGTCCAAGGCATCAGCTTTGCGTGTTCAACTTGCTTCTCTGATTGGTCTGCTGATTCGGCACTCTACTTTCATTGATGACTGTTTGGCTAATTCTGGAATTTTAGGTTCACTGACTGATGGCCTTAGAGACAAGCTGGAAAAAGTGAGGAGGTTCTCAATGGCTGCTTTGGGTGAGTTGCTATTCTATATATCTACTCAAAATGAAGACAGCAGAGATAACAATCAGCTTGAATCTCCATCAAAGGACAGTCGGGCCACAACTGGCTGGCAGGTCCCAAATTCATTGATATCTTTTGTGTCAGCACTTTTACGGAAGGGAGAGGATGATATAACTCAATTGTATGCATTGAGAACAATTGAGAATATTTGCAGTCAAGGAGGTTTCTGGGTGGGACGTTTTACTAGTCAAGATGTCATTACTAATCTGTGCTATATCTATAGGGCAGCAGGGAAACAAGAGAGCATGAGGCTTACTGCAGGATCATGTTTGGTGCGCTTAGTTCGTTTCAATCCTCCTAGCATTCAGCCAGTTATAGAGAAACTCTCATTTAAGGACCTAGCATCTGCTCTTGTCAAGGGCAGTCCACGTGAGCAGCAAATAAGCTTAAATCTTCTTAACATGGCAATGCTTGGAAGCCATATGTTTACAAATATTGGAAGATACCTTCTACCACTTGCTGAGGATAAGAATCTGATCCCAAGTCTTATGGCTCTTGTTGAGCAGGGTAGTGAAGTTTTGAAGGGAAAGGCACTTGTCTTTGTGGCTCTCCTTTGTAAGAATGGTAGGAGGTGGCTTCCACACTTCTTTTGCAGTCCAAAGCTACTTTCGGTGGTTGACAGGATGGGAAAAGAGAAGGATGCTTATGTGCGGCAGTGTTTAGATGCATTCTTGCATATTGTATCCTCTACTATTCCAGGTTTACTGGATAATATAATTGGTGATATCCAGCAAATGATGGCAGGAAGGCGTCATGGACACATCTCTTCCCTTACCAGCCGATCGGCTCCAAAAAACAACATTCATTTGTTTCCTGTTGTCTTTCATCTTCTAGGGAGCTCAACATTTAAGCACAAAGTGGTTACACATCAAGTCTTGCGGCAACTGGCAAACCTTATTAAAATCGTGGAAACACCATTTCAGGGCAGAGATGACTTCCAAATAACGCTTCTTCGAATTTTGGAGTCTCTAACAGAGGAGACTTCTGTGGTTCTTGGCTGCCCTGACATTTTCATATGTGAAATCCTCCCCAGTTTAACGGTTCTCTACAAGGGTAACAAGGACGGCGATGCCAGATTTTTGTGCCTTAAAAGTCTTTTTGATGTGATGGTCATTCTTTTGAGTGAACCAATTGAAGATGAACAAAGATTGAAGGACTTGACGTTCATATCTAATACCCGTTTTCTTCCTCTCTACCCGACCTTGATTGAAGATGAAGATCCTATTCCTATGTATGCACAGAAACTTCTTGTGATGTTACTAGAGTTCAGTTTTATAACAATTCCAGATATTCTGCATCTGAAGACAATCTCACAATGCTTTGAGTTCTTGCGTGGCGATCTCTCAAATGCTAATGTTAACAATGTTAAGCTGTGTTTGGCTCTGGCTTCTGCTCCTGAAATGGAGTCCAAGTTACTCTCTCAACTAAAAGTAGTTAGGAGGATCGGCAACTTTCTGGAGTTTGTTTACGCAAAGGGTATGGAAGATTTTCTAGAGCCAACTCTAGGACTGTGTAGGGCTTTTCTTGCACGTTCAATCAGCTGTGGAAAAGGCTCCAGCTACACTACAGAACTTACTCTCTTAGGTGAATGTCCTTCTGAGATGAGTGGCGTAGTTGATCCCCAGCAATGCGTAAGAGATATAATGGACTTTGGAAGCAATGTCGGAGTCTTGCTGGAGTTGAGTGGATCTACAGAAGCAAACATTGCTGATATAGCTTCTGAATGCATAATTTTACTGCTCAAGGCAGCTCCAAGAGAAGCCACCACTGGTTTACTAACCAAGCTCCCCAAGGTCAGTGTGATCCTAGAGTCCTGGCGTAAAGGCATCTCTCACTTATTGGTGCAACGAATGCTGCATGCTTTAGGTTATGCTTGCAGGCAATACTTATTGCATGCAATGATATTATCGATATCCATACCAGAGATTTCAAGAATTGAAGTGATTGTTGCTGAACTTAGAAGTTCAGGTGTCCCTGATTTAGCCAAAACTGCCGGGCTGGCCGCTTTGGAATTGCAGCGGCTGCCTCGCTGCATCTAA 4164 0.4217 MNQYHIYEAIGRGKYSVTLFVIVRISMILGTVLLGCLTVYKGRKKKTIEYFAIKSVDKSQKSKVLQEVRILHSLDHQNVLKYETSAHLWLVLEYCVGGDLLTLLRQDSHLPEDSIHDLAHDLVKALQYLHSSGIIYCDLKPSNILLDENGCAKLCDFGLARKLRDISKIPSSSLPQAKRGTPSYMAPELFEDGGVHSYASDFWALGCALYECYAGRPPFVGREFTQLVKSILSDPIPPLPGNPSRLFVNLINSLLVKDPAERIQWPELCGHAFWGTKLTPVPLPAQPAFNDMIELHAKPCLSERNGDKSFQNRTPPKYREKDVRGVLRQDENSVVGPRGHETPTRGTPNGHRTQTKGSGRTAEVKQKDPSNVSKAVNLLRLSRIAKSNLQKENEKENYRRPMPNSSENDSEVKIENTDMELDFNENTEDDANDEADDSDHSASVTDEKISNLNQNQGKAEEMESNIHQLDTPSVVNTPLSDDTRSFDQESTPEHPDMSATSPSVSPQVKKHRVKEDLGSALDFDSSRSSSNISQVLWHQSDLSVRPVMPSRKIDKMSEVIPSLPFEALHVSDFVKMSKEQLDAVHNRIIAIFNGNSSIGEKQNVIRYLEMLSSNADAANILTNGPIMLMLVKLLRQSKASALRVQLASLIGLLIRHSTFIDDCLANSGILGSLTDGLRDKLEKVRRFSMAALGELLFYISTQNEDSRDNNQLESPSKDSRATTGWQVPNSLISFVSALLRKGEDDITQLYALRTIENICSQGGFWVGRFTSQDVITNLCYIYRAAGKQESMRLTAGSCLVRLVRFNPPSIQPVIEKLSFKDLASALVKGSPREQQISLNLLNMAMLGSHMFTNIGRYLLPLAEDKNLIPSLMALVEQGSEVLKGKALVFVALLCKNGRRWLPHFFCSPKLLSVVDRMGKEKDAYVRQCLDAFLHIVSSTIPGLLDNIIGDIQQMMAGRRHGHISSLTSRSAPKNNIHLFPVVFHLLGSSTFKHKVVTHQVLRQLANLIKIVETPFQGRDDFQITLLRILESLTEETSVVLGCPDIFICEILPSLTVLYKGNKDGDARFLCLKSLFDVMVILLSEPIEDEQRLKDLTFISNTRFLPLYPTLIEDEDPIPMYAQKLLVMLLEFSFITIPDILHLKTISQCFEFLRGDLSNANVNNVKLCLALASAPEMESKLLSQLKVVRRIGNFLEFVYAKGMEDFLEPTLGLCRAFLARSISCGKGSSYTTELTLLGECPSEMSGVVDPQQCVRDIMDFGSNVGVLLELSGSTEANIADIASECIILLLKAAPREATTGLLTKLPKVSVILESWRKGISHLLVQRMLHALGYACRQYLLHAMILSISIPEISRIEVIVAELRSSGVPDLAKTAGLAALELQRLPRCI 1387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2609 1387 MobiDBLite consensus disorder prediction 303 414 - -
Glsi12g2609 1387 SMART serkin_6 4 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g2609 1387 MobiDBLite consensus disorder prediction 387 402 - -
Glsi12g2609 1387 MobiDBLite consensus disorder prediction 445 485 - -
Glsi12g2609 1387 SUPERFAMILY Protein kinase-like (PK-like) 38 275 IPR011009 -
Glsi12g2609 1387 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672|GO:0006468
Glsi12g2609 1387 PANTHER SERINE/THREONINE-KINASE ULK4-LIKE PROTEIN-RELATED 1 1384 IPR044591 GO:0000911|GO:0000914|GO:0008017
Glsi12g2609 1387 Pfam Protein kinase domain 38 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g2609 1387 ProSiteProfiles Protein kinase domain profile. 4 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g2609 1387 Gene3D Transferase(Phosphotransferase) domain 1 1 315 - -
Glsi12g2609 1387 SUPERFAMILY ARM repeat 584 937 IPR016024 -
Glsi12g2609 1387 Gene3D - 576 937 IPR011989 -
Glsi12g2609 1387 MobiDBLite consensus disorder prediction 346 377 - -
Glsi12g2609 1387 MobiDBLite consensus disorder prediction 313 328 - -
Glsi12g2609 1387 CDD STKc_ULK4 3 274 - -
Glsi12g2609 1387 MobiDBLite consensus disorder prediction 492 507 - -
Glsi12g2609 1387 MobiDBLite consensus disorder prediction 427 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2609 Glsi-ChrGlsi12 39684283 39691137 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2609 33 282 MAP Kinase Kinase Kinase AT3G06030 30.996 7.73e-32 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK ULK_ULK4 Glsi12g2609 Pkinase 1.2e-54 CL0016