Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2608 ATGGCTGCATTGGCATTATTGTCCATGATGGCCTCCACCGTCAATATTATGCCGGCCATAGCTAAGCTGACCTCGTTTCACTTCTCGGAGTGTCATAGCCTGGATCTCCGATCAGTATACACTTTACGTGGGCGTGTGCTTGAGGCTGACAAGCAAGGTTGGCCCAGTTCAAATGAGATGGCATCCTCACATAATGTTGAGTTGGAGGCAGCAAAGTTTCTACACAAACTCATTCAAGATTCTAAGGATGAGCCAGCCAAGTTGGCTACTAAACTCTATGTGATACTGCAACACATGAAATCAAGTGGGAAGGAACATTCAATGCCATATCAAGTGATATCAAGGGCAATGGAGACTGTCATCAATCAGCATGGTCTTGATATTGAAGCATTGAAGTCATCACGTCTTCCTTTAACTGGTGGAGCTCAAATAGGATCTTCACAGGCAGTAGGTGTTACAAAGGATTCCAGAGTGGGCTTGGCTGAAAATGAGATGTCCAAAATGGAACCATTTGCTTCTAGCCGGCCACCAGTTGCCCCAGGTAGTGGAGCACCTGATTATTATCAGGGATCTATAGCTCAAAGGAGTAGTCAGTCTTTTGATCAAGAAAGTCCATCTAGTTTGGACTCAAGATCTGCTAATTCACAGTCGCAAGACAGACGTGATACTGCTAACTGGGAAAAACAGGGGAATCAAAAGGATGGTAAGAAAGCTACAACAAAGAGAAAGAGGGGAGATACATCATCACCCATGGAACCACATGTTGACATTCCTTCTCATCTTGATCCCCGGAATACTGTTGTTAATGCAAGGAAGGGGAAAATGACAAAATCTGAACCATCAGATGGTCTTCCAGTTAAAAGTGGTGCTTATGGTAAGGCTCATGGAGGGATGGCAGTTGCTACTAGTGCTTATCCAATGACAGAGCCAATTTTCTCGAGTTCAATGCAGTATACTGGTGCACTTGAGCATGATGGGGGAAGCGCAGCCACTGTAGCTGATGGACATAAAGTAGCACAGATTGGCAGGCAAAACAGTGCCTCAGAAATGAATATGCTTAGACAAGGTGGTCTTCCCAGAGATACAGGAAAATCCCCTGTTTCTTCTGGAGCTTCATCATCTGCCACACCGTTCAAAGAACAACAGTTGAAACAGCTTCGAGCTCAGTGCCTTGTTTTTCTAGCATTTAGAAATGGTTTGCCACCAAAAAAATTACATCTTGAAATTGCATTGGGAACCACCTTTCCTAGAGAAGATGGTTCCCGCAAAGAGTTTATTGACCACAAAGGAAAATCACAATCTTCAAATGAACCAAGTAATACATCTGGGATGATGATGCCATTTGGAGGACTGAACAATGTAAGACAAACTGATAAAACCCCTTCAGGGTCCTCTTCTGCGGGAAAAGTTCCAGATGCTGATCCATTGTCAAAGGGAATTGAGAGCCCAAGAATGATGGAAGACAAAGGTAACCTGCATTCTGATGTTCATGCGGAAGAAAGGAAAAATCTCCTAGCCACAAAAAAGGCAGAGGTTGAAAGACAAATTCAAGAAAGAGTGGCTGCACAGGCTTGTTCAAACACATCATTTCAGCAGCAAGATTCTATGAGCACAAGGGGTGCTTTAGTTGGTAATAATCATATGGATGATGTTGACAATGGTAATCTGCAGGTTGGTAGATCTAACCAGCCCTCTTCTGTCATGGGTCTGAATAAGCCGATGAATCCTGAGATCATTAACTGGACTGGATTTGTCAGTCATAATGAGGGTTTGAAGGGACCTCCACAGGTCTCTGCTGTTCAGCATGAGTTGCCTATAGAAAGAAGAGACAATATTGCTGGTCAGTTTCAAAATATTGGTAATAGTTGTGGATCCCGGAATTACAATTCCATTAATAACTTGACTTCTTATTCCTTAAAAGAGCACTGGAAACCTGCTCCAGGAGCTGATAGTGATCCTCAGGGAGTGGCCATGTTGAAGGATGTAAATGTAATGGCAAGACATGTTTCTACGGATGCGCTTAAAACAGTTCCAGTTGATGATGTATCAAGACGTGGCTTCTCTTTTGCTACAGAGCAAGAAGGGAGTGAGAGGTTGGTATCAGCTGATTTTCCAGTGTCTCCAAAATATACAATGTCAGAGAGATGGATTATGGATCAGCAGAAGAAGAGGCATCTAGTTGAGCAAAATTGGGTAGAAAAACAGCAGAAGACAAGGCAAAGAATTACTTCATGTTTTGACAAGCTAAAGGAAAATGTGAGCTCATCTGAAGATATATCTGCTAAGACAAAAAGTGTCATAGAGCTGAAAAAACTTCAATTATTGGACCTACAACGTCGTCTCCGCAGTGATTTCCTGAATGATTTTTTCAAACCAATTACAACAGAGGTGGAACATTTGAAATCATTTAAGAAACATAGGCATGGTAGGAGGGTCAAACAACTGGAAAAGTTTGAGCAGAAAATGAAGGAAGAACGTCAGAAGAGAATTCGTGAGCGGCAGAAGGAGTTCTTTGGTGAGATAGAAGTTCACAAGGAAAGACTAGATGATGCATTCAAAACCAAGAGGGAACGGTGGAAGGGTTTCAATAGATACGTGAGGGAGTTCCATAAAAGAAAAGAGCGCATTCATCGTGAGAAGATTGATAGAATTCAGCGGGAAAAGATTAATTTGTTGAAAATAAATGACGTGGAGGGTTATCTTCGAATGGTACAGGATGCAAAATCAGATCGTGTAAAGCAACTTCTTAAAGAGACTGAGAAGTATCTTCAAAAGCTTGGGTCCAAGCTGCAGGAAGCAAAGACTGCAGCAGGACGTTTTGAGCATGATGTTGATGAGGCAGGAAGTGGCAGTATTTTTGAGCAAAATGAAACAGCTTTTGAAAATGAGGATGAAAGTGATCAGGCGAAGCATTATTTGGAAAGCAATGAGAAGTATTATATGATGGCGCATAGTATAAAGGAGAGCATTGCTGAGCAGCCATCTTGTCTGCAGGGCGGAAAATTGAGGGAGTATCAAATGAATGGCCTGAGGTGGCTGGTGTCACTATACAACAATCACTTGAATGGAATCCTTGCTGATGAAATGGGACTGGGTAAAACTGTTCAGGTTATTGCTCTAATTTGCTACCTGATGGAAACAAAAAATGATAGAGGACCTTTTCTTGTGGTTGTACCCTCTTCAGTCCTACCTGGGTGGGAGTCAGAAATAAACCTTTGGGCACCTGGTATTCATAAAATTGTCTATGCTGGGCCCCCAGAGGAGCGGCGTCGTTTATTCAAAGAAAGGATCATTCACCCAAAATTCAATGTCCTTTTGACAACTTACGAGTATCTGATGAACAAGCATGATAGACCAAAGCTGAGCAAAATACACTGGCACTATATTATAATTGATGAGGGTCACCGCATAAAGAATGCTTCTTGCAAGTTGAATGCTGACTTGAAACACTATCAGAGCTCTCATAGATTGTTGTTAACTGGAACACCACTGCAGAACAATCTTGAGGAACTGTGGGCACTACTTAACTTCTTGTTACCTAACATATTTAACTCATCAGAAGACTTTTCTCAATGGTTCAATAAACCTTTTCAGAGTAATGGAGATAGTTCACCTGATGAAGCCTTACTGTCTGAGGAGGAGAATCTCTTGATCATAAACCGTCTGCATCAAGTTCTAAGGCCGTTTGTACTTCGGAGGCTGAAACATAAGGTTGAAAATGAGCTGCCTGAAAAGATTGAGAGACTTGTAAGATGTGAGGCTTCTGCATATCAAAAACTTTTGATGAAGAGGGTGGAAGAAAATCTTGGTTCTATTGGCGCTACAAAGGCTCGATCTGTACACAACTCTGTTATGGAGCTTCGTAATATATGCAATCATCCATATCTCAGCCAGCTTCATGCAGAGGAGGCAAGTTCTTATCTCACTTAG 3930 0.4206 MAALALLSMMASTVNIMPAIAKLTSFHFSECHSLDLRSVYTLRGRVLEADKQGWPSSNEMASSHNVELEAAKFLHKLIQDSKDEPAKLATKLYVILQHMKSSGKEHSMPYQVISRAMETVINQHGLDIEALKSSRLPLTGGAQIGSSQAVGVTKDSRVGLAENEMSKMEPFASSRPPVAPGSGAPDYYQGSIAQRSSQSFDQESPSSLDSRSANSQSQDRRDTANWEKQGNQKDGKKATTKRKRGDTSSPMEPHVDIPSHLDPRNTVVNARKGKMTKSEPSDGLPVKSGAYGKAHGGMAVATSAYPMTEPIFSSSMQYTGALEHDGGSAATVADGHKVAQIGRQNSASEMNMLRQGGLPRDTGKSPVSSGASSSATPFKEQQLKQLRAQCLVFLAFRNGLPPKKLHLEIALGTTFPREDGSRKEFIDHKGKSQSSNEPSNTSGMMMPFGGLNNVRQTDKTPSGSSSAGKVPDADPLSKGIESPRMMEDKGNLHSDVHAEERKNLLATKKAEVERQIQERVAAQACSNTSFQQQDSMSTRGALVGNNHMDDVDNGNLQVGRSNQPSSVMGLNKPMNPEIINWTGFVSHNEGLKGPPQVSAVQHELPIERRDNIAGQFQNIGNSCGSRNYNSINNLTSYSLKEHWKPAPGADSDPQGVAMLKDVNVMARHVSTDALKTVPVDDVSRRGFSFATEQEGSERLVSADFPVSPKYTMSERWIMDQQKKRHLVEQNWVEKQQKTRQRITSCFDKLKENVSSSEDISAKTKSVIELKKLQLLDLQRRLRSDFLNDFFKPITTEVEHLKSFKKHRHGRRVKQLEKFEQKMKEERQKRIRERQKEFFGEIEVHKERLDDAFKTKRERWKGFNRYVREFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVKQLLKETEKYLQKLGSKLQEAKTAAGRFEHDVDEAGSGSIFEQNETAFENEDESDQAKHYLESNEKYYMMAHSIKESIAEQPSCLQGGKLREYQMNGLRWLVSLYNNHLNGILADEMGLGKTVQVIALICYLMETKNDRGPFLVVVPSSVLPGWESEINLWAPGIHKIVYAGPPEERRRLFKERIIHPKFNVLLTTYEYLMNKHDRPKLSKIHWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFQSNGDSSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLVRCEASAYQKLLMKRVEENLGSIGATKARSVHNSVMELRNICNHPYLSQLHAEEASSYLT 1309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2608 1309 CDD DEXHc_SMARCA2_SMARCA4 999 1235 - -
Glsi12g2608 1309 SMART QLQ_2 376 411 IPR014978 GO:0005524|GO:0005634|GO:0006355
Glsi12g2608 1309 SMART ultradead3 998 1192 IPR014001 -
Glsi12g2608 1309 MobiDBLite consensus disorder prediction 365 380 - -
Glsi12g2608 1309 MobiDBLite consensus disorder prediction 167 265 - -
Glsi12g2608 1309 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1014 1181 IPR014001 -
Glsi12g2608 1309 MobiDBLite consensus disorder prediction 481 496 - -
Glsi12g2608 1309 MobiDBLite consensus disorder prediction 189 220 - -
Glsi12g2608 1309 Pfam SNF2-related domain 1006 1296 IPR000330 GO:0005524|GO:0140658
Glsi12g2608 1309 Coils Coil 815 835 - -
Glsi12g2608 1309 ProSiteProfiles HSA domain profile. 820 894 IPR014012 -
Glsi12g2608 1309 MobiDBLite consensus disorder prediction 221 250 - -
Glsi12g2608 1309 FunFam Chromatin structure-remodeling complex protein SYD 993 1242 - -
Glsi12g2608 1309 Coils Coil 916 936 - -
Glsi12g2608 1309 Gene3D - 1243 1302 IPR027417 -
Glsi12g2608 1309 MobiDBLite consensus disorder prediction 418 496 - -
Glsi12g2608 1309 PANTHER SNF2/RAD54 HELICASE FAMILY 709 1304 - -
Glsi12g2608 1309 MobiDBLite consensus disorder prediction 432 467 - -
Glsi12g2608 1309 Gene3D - 993 1242 IPR038718 -
Glsi12g2608 1309 MobiDBLite consensus disorder prediction 354 380 - -
Glsi12g2608 1309 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 977 1233 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2608 Glsi-ChrGlsi12 39665114 39677723 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2608 1023 1296 RAD5 or RAD16-like Gene Family AT5G22750 27.647 1.58e-23 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Glsi12g2608 SNF2_N 1.8e-68 CL0023