Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi12g2604 | ATGAAGGAAGAAAGCACCTTATCTTATTACTCCTTGCCTTCTGCTGATATTCTACTTGTAGTGTCTGTTAAATTCGTGGCACATGAAAGAGGCCTGATTACTTACAAATCATATCACATTTTAAAATCTGGAATTTTGATGGACTGCAATAAAGAAGAGGCCTTAAGGGCCAAGGTCATTGCTGAAAAGAAGATGGAAAGCAAGGATTTCTTAGGGGCTCGTAAAATTGCTCTTAAAGCTCAGCAGCTATATCCTGATCTGGAGAATATAACTCAAATGCTTACTGTATGTGATGTACATTGCTCTGCTGAGCAGAAATTCTTTGGTAACGAGATTAACTGGTATATAATTCTTCAAATTGAGCAGACAGCTGATGAGGCAACAATAAAGAAGCAATACAGAAAGTTTGCTCTCCAACTTCACCCTGACAAGAACAAGTTTGCTGGTGCAGAAGCTGCATTTAAGCTAATTGGAGAAGCTCAAAGAGTGCTTCTGGACAAAAATAAACGGGCTTTGCTTGACATGAAGTTCAAAGTTCCTATGAACAAATCATACCGTGCAACACCAAAGGTTCACACAAACTTAAATGCTGGGGTACAAAGCAATGTGAGGGCCAATTTTTCAAATTTGAATCCTCAGCAGCAGCAGCATAGGCAGTCAACTCAGCAGGGGCCCAATGGTAGCCGCCATACTTTTTGGACTGCCTGCCCATCTTGTTTTAGTAGATATCAGTTTTACAGAGAAGCTATAAATAGATCGTTTTGCTGTCAAACTTGCAGTAAGCACTTTATTGCAGCTGAGGTGAATGTGCAAGGTCCATCACCAGTAAATAATTCAAATCAGCAATCATTTTTCCAACAGAAAGATGATCTAAATCAAGGTGCTTTCAATACAAAGAATTCTGAGAAAAAAGGCTCCAATGTCTCTGAAAAGCTGAACAGAAAAAGAAGGAAGAAGGTAGCAGAATCCAGTGAAAGTTCTGATTCTATGGACAGCACTGGTTCTGAAGACGATATGGTTGCTGACAAGGATGGTGTTCCTGGTGGACAAAACTGTCCAACTGACAGAGAAGGGCATCCACGTAGGTCTACACGGCAAAAGCAGCAGGTTACATACCAGGAGAATGTGAATGATGATGATGATGATGACATCTTCAAGCCTGCAAACAGAGTGAGGAGAAGTGGTTCATCATGTGTTGCAGAGGAAGATCATGGGGAGACAGCTAAAATGAATAATCAGAATGGTTTAGCAACTGATCTGAAAGATGATCAGAAAGAGATGAAACAGAAACACAATCGTTATTCTGAAGAGAGCTTACCCAATAGAAATGCTATGGATATGAGGGGAAAAGCAGCAGTGGGATGCTCAAAAGGGAAGGGAGAACCTTCCAAGCATTCTACATCAGATTCAACCTCCGAGGCAACAGAGGCTCCTAATTTTTTTATCTGTCCTGATGCAGAGTTTAATGATTTTGAAAATGATAAGAAAGAGGAGTGTTTTGCAAATGGGCAGATTTGGGCTGTTTATGACACAGCCGATGGCATGCCTAGATTCTATGCTCTAATCAGAAAAGTTCTCTCTCCTGGGTTCAAGTTGCGGATAACATGGTTTGAACCAGAGCCAGATGACAAGGATGAAATCAACTGGGTAGAAGAGGATTTGCCAGTTGCTTGTGGAAAGTATGGGCTTGGTAAAACTGAAATTACTGAAGATCGACTCATGTTCTCTCATCTAATTTTGTGTGAAAAGATTGGACGCAGTACATTTAAGGTATATCCTAGAAAGGGAGAAACATGGGCTCTGTTTAAAAATTGGGATATCAAATGGTACGCCGATGTGGAGTCTCATCAGAAGTATGATTATGAGTTTGTTGAAATTGTGTCAGATTATGTTGAAGGCGAGGGAGTATCTGTTGCATACTTGGCTAAGTTGGAATGCTTTGTGAGTCTCTACTCTCGAACTATAAAGGAAGGTAGGGACTCATTTCAAATTCCATCAGTGGAGTTATTCAGGTTCTCTCACAGGGTTCCTTCTTTTAAAATGACTGGTCAGGAAAGAGTTGGTGTTCCTATAGGATCTCATGAACTTGATCCTGCATCTTTGCCTACAAGTCATGAAGAGAATGCTGTTCCTGAAGATTTGGAAGTTAAGTTCATTCAGTGTAAAGGGCACTTTGTTAGGGTTTCATTGACTTCTGCATGTGATTTACCATTGAAAAACCAAATGGGTTATCATGGCAACGATAATGATAAAACTACATCAATGGAGAGGAACCAAGTTGGAGTTGCAAAATTTGGCTGTTTTGAGACTGATCCATTTGAGAGCCACTTATCACCGTCTTCATCTCCTAGTGGAAAATATGATGATAAGAGTGATAGTAAATGGCGATATCTAGAAAACACACTGTCGTTCAATGATAATACTCCAGTTGAAGATGCATTAGAAACACAACTAGTGAACCTTGCCGGTGAAACTGAACCGTTGGATAATATTGATTGTGTTGAGGATATGAGCACCCAACTATTGGATCAGATTGGTGAAGGAGTTGCCTTTGACAGTGATGGTGAAGGAACTGATAGAACTGAAGTTTTAGAGAATGTAGATGAGCTCTCTGCTGATGATGCTCATTACAGTTGCAGTGCCCAATCAGCAGATAGCAAGGAAAATCCATTTGAACCCTGTTGTGGACATGGTAAGAAGAAATTATCAGTGCAGACTGATGCTATTGTTGATGAACAGACCAGTGCAGGTCCAATGCCACCGCAATTTACTTTTCTCCATGAAGAATCTTTACGGGACTCTGCCCTAGCTGCTCACAATTTGACTTTGAAAAAGCCTAAGGTTGAGACCAATTCTGTCTTTATTATGAGTCAGTCTCGAGAACCAGTTGCTGTAAAACATGGGAAACCTGGAGGTTCTGAGAAAGTTAGTGAAGTTGATCAGGAATATGATCAAGGGAAATGGACTGGGCAAGTAGAGGGGCTTATGAACCAAAATAGATTCAAGGTTGCTCACTCAGCAGTGAGAAAACTTTTTAATGATGAATTACCTGCTGAAAGGACAGAACCTTCTCTTAGAAGTAATGGTGTTAATGAAGGAGAAGACTTGGCTAAGTTTCCTATCTATGATGGTGAGTTGGCAGGGTTAAGTTATGTTGACTCTCAAGAACCTGGAGAGTTATCGCAGGCCAATGCTCTTGAGTTTATAGATAGGTATGTTGAAGAAAATATTATGGAGTTTGATCAAGAAGCTAATCATGTTAAAAATGTGCTGAAAAAATCAAAATATGTTCCTAGTACTCAAGGGCAGCAAAGTCTGGCTAAGAGAGCCAATTATAGAGGCAAAGCTGGAAAATCTGGCGTTTATGACTGGGATGATAACCGTGAGGATGAAAGAGGAGGAGATACATTTTTTAGGAGAAAGGAGGAATTTTTGGGCGGTAAAAGCTTTAAACGGAAGTCTTTGCATGGAGTAAAGGATAATACTGTACAAGAAACAGCTACAAAATCAGGAAGGAACCTTGTAAATGACTTGGATAAACAACTTAACATCAATTCCTCTAGAGGAGAGTTGGAACCTAATGCTACGGCAGTAGATGCACAGGAAATGCTAGGTGTAGGTTTAGATACGCAAATGGCTGCAGAAGGTATGGAAGCCTTATGCAATGGGGAGGGCATAGTCAATAAAGATGCTAATGATGCCACTCATGTAACTAGAAGCAGTTTAGGAGATCCACCTAATAGCTCTTCTGTAGCAAAAATAACAGCAATTACTTCAAAGGAATGTTCAATACAGTATGCCAGGAAAAGGAAGTTTAATGTTAAATTGGATCTGCAAACTTCAAATTCATCAAAGAGATATATGAAGGAAGCCAAGCAGCTGTGCAAAAGGGGCAATTTGTTGACAAGATCAAAGAGAAGTAAGTTAAATGCAGAAGACAACCCAACTTCCATTGCCAGTGAAAACGGCAGTGATTTGCCTTCTCATATTATTGAGCAAAAGTTAGCAAGGGACTCAAAAATACATCAGGTTGCGGGGCTAAATAATTGTACTGGAAGTGTGAGAAGAAGTGGCATGAGGTTAATTGGCAGAAGGCATTTACAGGGTGGACTTTGTGCTTTTACCCCAGTTGCTTACAGAACTAGGCAATCCTTAGGAAAAGATCAATTGGTGAAGCCTGATAGGCCATCAAGAAGTTTTAGAGAAGAGGATAGAGGGGTTGGTTCGCTTGAGAAACGAAATAGTGGCACCAGCATCCAGGGGTCAAAAGCATTCGGTCCTAAATCTACTATAGAGTGTTCTGATCCCTTTGGAGTGGATGAAAATACCAAATTGTGTCAACTTGAGAAATCTGCTTCAAAGTTTAGTAAAGTTAATAATGGCATTATAATGGATACATTGGAATATCCTAAAAGAAGAAGATCTCTTCGGAAGTTGTGTCATGATAAAGGATCTGAGAAATTAAGTGCCACATCTAAACCATCTGCTCAGTCTGAAGATATTGGGGAGTCTAATGCTAAGAGAAAAACGAGGACTGAGGCTACAAGTGTTGCCGAATCAAACATGAATGGCCAAACTCAGTCATCTTCATACATTGCTTCAATGATGTCTTCTATTGACCAGCAAGAAGGAAAAATGTCAGACCAGATTTTAGATAAAGTAAATCCAGGGGATACTGCCATTTGTTGTAATGTTGTTGATAAGGATCCATATCTGAATTCTGGTGGAAAGAATGAGACAGATTTCCTGTTGTCTGCCAAAAGTTTTGAAGACACTGGGTTGGATGAGTTGCTAAGAGAGAGATACAAGTCATTTGATTTGGCACCTTCAACTCCAGCTAATTTTAAGACAACAGTGAATGATGCATCACCTGTTTTTATGGGTGACAATTATCACGAACAATCATGCAATGGAAATATTTCGAAATTACCCCTCGTCAAAGTATATCGTAGGGAACTCCATAGAGAACTCCGTAGCTTAAGTGCCACAGGACTTGAAACTACTACTCCATCTAAAGATTTAAGAAAGAGGAGGGACATGACTCATGTTCGAATTCTGTTCAGTCACCATTTAGATGAAGATATAATTAAGCATCAGAAGAAGATTTTAGTACGGCTTGGAGCTTCTGTAGCTTCTTCCATTTCAGATGCAACTCATTTCATAGCAGACGAATTTGTGCGTACAAGGAATATGTTGGAAGCTATTGCTTCTGGGAAACTAGTGGTCACACATTTATGGATTGAGAGCTGTGGACAAGCTTGCTGTTTTATTGATGAGAAAAATTACATATTGAGAGATGCCAAAAAGGAAAAGGAGTTTGGCTTCTGCATGCCTGTGTCGCTGGCACTTGCATCACAGTATCCACTATTAGAGGGTCGAAGAGTATTGATCACCCCAAATGCAAAACCCAGTAAAGAGATTATTTCATGTTTAGTTAAGGCAGTTCAGGGCCAGGTGTCATTGAAATTAGGTGTGTCCCCATGCTTCATAGACACAAACAGACATGTATCTCCAGGCGAGAAGGCAGTGGAGAGAATTGGCAGATCTTCTCTGAAGGATGATAAGACTCCGGATGATTTGCTTGTCCTATCTTGCGAAGAAGATTATGCTTCCTGTGTGCCTTTTCTCAAAAAAGGGGCAGCGATATACAGTTCAGAGCTATTATTAAATGGCATAGTTATTCAGAAGCTAGAGTATGAAAGGCATCAACTCTTTGGAGACCATGTGAAGAAAACCCAGTCAACCCTATGGTTGAAAAGAGCTTCCTTTCCGTGA | 5775 | 0.4019 | MKEESTLSYYSLPSADILLVVSVKFVAHERGLITYKSYHILKSGILMDCNKEEALRAKVIAEKKMESKDFLGARKIALKAQQLYPDLENITQMLTVCDVHCSAEQKFFGNEINWYIILQIEQTADEATIKKQYRKFALQLHPDKNKFAGAEAAFKLIGEAQRVLLDKNKRALLDMKFKVPMNKSYRATPKVHTNLNAGVQSNVRANFSNLNPQQQQHRQSTQQGPNGSRHTFWTACPSCFSRYQFYREAINRSFCCQTCSKHFIAAEVNVQGPSPVNNSNQQSFFQQKDDLNQGAFNTKNSEKKGSNVSEKLNRKRRKKVAESSESSDSMDSTGSEDDMVADKDGVPGGQNCPTDREGHPRRSTRQKQQVTYQENVNDDDDDDIFKPANRVRRSGSSCVAEEDHGETAKMNNQNGLATDLKDDQKEMKQKHNRYSEESLPNRNAMDMRGKAAVGCSKGKGEPSKHSTSDSTSEATEAPNFFICPDAEFNDFENDKKEECFANGQIWAVYDTADGMPRFYALIRKVLSPGFKLRITWFEPEPDDKDEINWVEEDLPVACGKYGLGKTEITEDRLMFSHLILCEKIGRSTFKVYPRKGETWALFKNWDIKWYADVESHQKYDYEFVEIVSDYVEGEGVSVAYLAKLECFVSLYSRTIKEGRDSFQIPSVELFRFSHRVPSFKMTGQERVGVPIGSHELDPASLPTSHEENAVPEDLEVKFIQCKGHFVRVSLTSACDLPLKNQMGYHGNDNDKTTSMERNQVGVAKFGCFETDPFESHLSPSSSPSGKYDDKSDSKWRYLENTLSFNDNTPVEDALETQLVNLAGETEPLDNIDCVEDMSTQLLDQIGEGVAFDSDGEGTDRTEVLENVDELSADDAHYSCSAQSADSKENPFEPCCGHGKKKLSVQTDAIVDEQTSAGPMPPQFTFLHEESLRDSALAAHNLTLKKPKVETNSVFIMSQSREPVAVKHGKPGGSEKVSEVDQEYDQGKWTGQVEGLMNQNRFKVAHSAVRKLFNDELPAERTEPSLRSNGVNEGEDLAKFPIYDGELAGLSYVDSQEPGELSQANALEFIDRYVEENIMEFDQEANHVKNVLKKSKYVPSTQGQQSLAKRANYRGKAGKSGVYDWDDNREDERGGDTFFRRKEEFLGGKSFKRKSLHGVKDNTVQETATKSGRNLVNDLDKQLNINSSRGELEPNATAVDAQEMLGVGLDTQMAAEGMEALCNGEGIVNKDANDATHVTRSSLGDPPNSSSVAKITAITSKECSIQYARKRKFNVKLDLQTSNSSKRYMKEAKQLCKRGNLLTRSKRSKLNAEDNPTSIASENGSDLPSHIIEQKLARDSKIHQVAGLNNCTGSVRRSGMRLIGRRHLQGGLCAFTPVAYRTRQSLGKDQLVKPDRPSRSFREEDRGVGSLEKRNSGTSIQGSKAFGPKSTIECSDPFGVDENTKLCQLEKSASKFSKVNNGIIMDTLEYPKRRRSLRKLCHDKGSEKLSATSKPSAQSEDIGESNAKRKTRTEATSVAESNMNGQTQSSSYIASMMSSIDQQEGKMSDQILDKVNPGDTAICCNVVDKDPYLNSGGKNETDFLLSAKSFEDTGLDELLRERYKSFDLAPSTPANFKTTVNDASPVFMGDNYHEQSCNGNISKLPLVKVYRRELHRELRSLSATGLETTTPSKDLRKRRDMTHVRILFSHHLDEDIIKHQKKILVRLGASVASSISDATHFIADEFVRTRNMLEAIASGKLVVTHLWIESCGQACCFIDEKNYILRDAKKEKEFGFCMPVSLALASQYPLLEGRRVLITPNAKPSKEIISCLVKAVQGQVSLKLGVSPCFIDTNRHVSPGEKAVERIGRSSLKDDKTPDDLLVLSCEEDYASCVPFLKKGAAIYSSELLLNGIVIQKLEYERHQLFGDHVKKTQSTLWLKRASFP | 1924 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi12g2604 | 1924 | CDD | DnaJ | 113 | 166 | IPR001623 | - | |
| Glsi12g2604 | 1924 | PANTHER | DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN-RELATED | 47 | 779 | - | - | |
| Glsi12g2604 | 1924 | SUPERFAMILY | Chaperone J-domain | 109 | 178 | IPR036869 | - | |
| Glsi12g2604 | 1924 | SMART | dnaj_3 | 112 | 169 | IPR001623 | - | |
| Glsi12g2604 | 1924 | MobiDBLite | consensus disorder prediction | 294 | 417 | - | - | |
| Glsi12g2604 | 1924 | SMART | BRCT_7 | 1677 | 1754 | IPR001357 | - | |
| Glsi12g2604 | 1924 | Pfam | Regulator of Ty1 transposition protein 107 BRCT domain | 1669 | 1764 | IPR001357 | - | |
| Glsi12g2604 | 1924 | Gene3D | BRCT domain | 1670 | 1787 | IPR036420 | - | |
| Glsi12g2604 | 1924 | ProSiteProfiles | dnaJ domain profile. | 113 | 177 | IPR001623 | - | |
| Glsi12g2604 | 1924 | Pfam | DnaJ domain | 113 | 174 | IPR001623 | - | |
| Glsi12g2604 | 1924 | SUPERFAMILY | BRCT domain | 1672 | 1780 | IPR036420 | - | |
| Glsi12g2604 | 1924 | MobiDBLite | consensus disorder prediction | 452 | 476 | - | - | |
| Glsi12g2604 | 1924 | Pfam | Domain of unknown function (DUF3444) | 481 | 685 | IPR024593 | - | |
| Glsi12g2604 | 1924 | MobiDBLite | consensus disorder prediction | 1387 | 1410 | - | - | |
| Glsi12g2604 | 1924 | MobiDBLite | consensus disorder prediction | 1385 | 1427 | - | - | |
| Glsi12g2604 | 1924 | CDD | BRCT_MDC1_rpt1 | 1683 | 1757 | - | - | |
| Glsi12g2604 | 1924 | ProSiteProfiles | BRCT domain profile. | 1700 | 1764 | IPR001357 | - | |
| Glsi12g2604 | 1924 | MobiDBLite | consensus disorder prediction | 1481 | 1526 | - | - | |
| Glsi12g2604 | 1924 | MobiDBLite | consensus disorder prediction | 304 | 325 | - | - | |
| Glsi12g2604 | 1924 | Gene3D | BRCT domain | 1788 | 1911 | IPR036420 | - | |
| Glsi12g2604 | 1924 | Gene3D | DnaJ domain | 111 | 230 | IPR036869 | - | |
| Glsi12g2604 | 1924 | Coils | Coil | 417 | 437 | - | - | |
| Glsi12g2604 | 1924 | MobiDBLite | consensus disorder prediction | 1411 | 1427 | - | - | |
| Glsi12g2604 | 1924 | MobiDBLite | consensus disorder prediction | 1305 | 1324 | - | - | |
| Glsi12g2604 | 1924 | PRINTS | DnaJ domain signature | 133 | 148 | IPR001623 | - | |
| Glsi12g2604 | 1924 | PRINTS | DnaJ domain signature | 115 | 133 | IPR001623 | - | |
| Glsi12g2604 | 1924 | PRINTS | DnaJ domain signature | 149 | 169 | IPR001623 | - | |
| Glsi12g2604 | 1924 | CDD | BRCT_PAXIP1_rpt6_like | 1789 | 1898 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Glsi12g2604 | Glsi-ChrGlsi12 | 39625072 | 39635357 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Glsi12g2604 | 50 | 268 | SUVH1 or 3-interacting DNAJ domain-containing protein superfamily | AT2G01710 | 35.398 | 5.28e-30 | 122 |