Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2603 ATGCAAGCAGCTCAAGCAGCCATTGACGAAGCTTCTGATAATTCACATCAGATTGACCTCCGATTAAACAAAGAAGTTTCAGATCATGGACCCAGTGGGAGGCGTCCAGATATTTCACTTCAAATTCCACCTAGACATTTAGGGTTTGGCAGTACACGTGGGGGAAGGGTTTTGGACCATTCTCAAAGTTTCTCTAAAGGGATTCCATCATCAGGACACTTCTTGCGGGCTTTGAGCTTGAAAAGAAAAGGCAATACAGCAGATGGTGAAAGAAGCTGCCTCCTCAATTCAGACCCCAAGACAGCTCCGGAAAGTCCTAATATGGCCAACTTCACATCTACAGTGGCATGGAATAGATGTACTTCTCTTCCTGTCACACCTGCAACAAATCTGTCCCCTTCAATTTCTACACCTGCTTCTGCAAGGACATATAATGAACATCCTAAACCACATAAAGAGGTTGTTCGTTCCAAGGTTTCAAGGTCCCTCTCTGTACCTGTACGGAATATTGTCATCGTGAGATCTATGTCTTTTGCTGCTCACAGTGAGCATGATCAACAAGATCAGAATGATGATCAAATAACTCCTGTGCCAGTAGAAAATGCTGATGAAGAAATTCCTGAAGAAGAAGCAGTGTGCAGGATCTGTTATGATGTGTGTGATGAAAGAAATACCTTAAAATTGGAATGCAGTTGCAAAGGTGACCTGAGGCTGGTGCATGAAGAATGCGCAATTAAATGGTTTAGCACAAAGGGAAATAAGAAATGTGATGTTTGTGGGCAAGAGGTTCAGAATCTACCTGTAACTTTACTTCGTGTGCCCAGCTCTGCTCAAATGGGAAGGAGACAAGTGCAAGGTCAACAGAACTTGCATCCAGAGTCAATAAGTGCCTGGCAAGACTTCGTGGTGCTTGTCTTAATAAGCACGATATGCTATTTTTTCTTCCTCGAGCAGCTACTGCTCCCGGACATGAAGACTCAGGCAATCATTATTGCAGCACCATTTGCCTTTACCTTGGGTCTCCTGGCATCCATTTTTGCAGTCATCCTTGCAATAAAAGAGTATATATGGACATATGCTGCTCTTGAGTTTGCTCTTGTGGCTATAACTGTGCACCTGTTCTATTCTATGTTGCATGTGAAGGCCATCTATGCAATACTACTCTCATCAGTTTTGGGTTTTGGTGTAGCTATGACTATCAACTATGTATATATCCAATATGTTTCTTGGCGCCTTCAGGTCTCTCAGGATGCCAACCCAGTATGA 1266 0.4321 MQAAQAAIDEASDNSHQIDLRLNKEVSDHGPSGRRPDISLQIPPRHLGFGSTRGGRVLDHSQSFSKGIPSSGHFLRALSLKRKGNTADGERSCLLNSDPKTAPESPNMANFTSTVAWNRCTSLPVTPATNLSPSISTPASARTYNEHPKPHKEVVRSKVSRSLSVPVRNIVIVRSMSFAAHSEHDQQDQNDDQITPVPVENADEEIPEEEAVCRICYDVCDERNTLKLECSCKGDLRLVHEECAIKWFSTKGNKKCDVCGQEVQNLPVTLLRVPSSAQMGRRQVQGQQNLHPESISAWQDFVVLVLISTICYFFFLEQLLLPDMKTQAIIIAAPFAFTLGLLASIFAVILAIKEYIWTYAALEFALVAITVHLFYSMLHVKAIYAILLSSVLGFGVAMTINYVYIQYVSWRLQVSQDANPV 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2603 421 PANTHER OS02G0165000 PROTEIN 60 417 - -
Glsi12g2603 421 SUPERFAMILY RING/U-box 209 263 - -
Glsi12g2603 421 CDD RING_CH-C4HC3_MARCH 213 260 - -
Glsi12g2603 421 MobiDBLite consensus disorder prediction 130 157 - -
Glsi12g2603 421 Pfam RING-variant domain 213 259 IPR011016 GO:0008270
Glsi12g2603 421 ProSiteProfiles Zinc finger RING-CH-type profile. 205 266 IPR011016 GO:0008270
Glsi12g2603 421 SMART ringv_2 212 260 IPR011016 GO:0008270
Glsi12g2603 421 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 199 268 IPR013083 -
Glsi12g2603 421 MobiDBLite consensus disorder prediction 86 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2603 Glsi-ChrGlsi12 39618194 39623766 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2603 206 320 C3H Transcription Factor Family AT5G05830 31.783 3.18e-11 60.8