Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2598 ATGGCGAGATACCGAAGCCGGAGCAGAAGCTACAGCCCTCGCCGGAGAAGCAGAACCCCACCGCGTGGACGCAAGCAATACGATGATGACTCTCGCGATCGCTACCGTGAAAGCAGGTCTTACAGAGACCGCCGCTCCCCCGCTCCTTCTGGCTTGCTAGTTCGTAATCTTCCCCTTGATGCTAGGCCTGAAGATCTTAGGGTCCCATTTGAGCGCTATGGTCCAGTGAAGGATGTTTATCTTCCTAAGAATTACCACACTGGCGAGCCTCGGGGATTTGGATTTGTAAAATTCCGATATGCTGAAGATGCAGCTGAAGCAAAACACCAACTTAATCATACTGTTATTGGTGGGCGTGAAATAAGAATTGTGTATGCTGAGGAAAATAGGAAAACTCCTCAAGAAATGCGTAGTAGTAGTTCTCGAACAAGTGGTCGATATGGAGGAAATGGTAGAAGGAGAACTCCTACAAGATCCCCAAGACGCAGATATAACTCTTACTCACCGTCTCCATCACCAGCTAGGGATGACTCAAGGGATCACAGGGGCAGGGATGATTATTATTCTCCTGAGAAATCGAGATCTTATTCTAGGTCTCCTTCTCCTCGCAGGGGGAAGGATTACAGGAGGTCCCCAAGTCCAAGTGAGAATGGTCGGAGTCCTGATGACAAGAGGGATCATACTCATAGCAGATCAGAGAGTCCTAGTGGTGGTCGCGGTCCCTCAAGGTCTCGGTCATACAGTCCTCGTTGA 753 0.4954 MARYRSRSRSYSPRRRSRTPPRGRKQYDDDSRDRYRESRSYRDRRSPAPSGLLVRNLPLDARPEDLRVPFERYGPVKDVYLPKNYHTGEPRGFGFVKFRYAEDAAEAKHQLNHTVIGGREIRIVYAEENRKTPQEMRSSSSRTSGRYGGNGRRRTPTRSPRRRYNSYSPSPSPARDDSRDHRGRDDYYSPEKSRSYSRSPSPRRGKDYRRSPSPSENGRSPDDKRDHTHSRSESPSGGRGPSRSRSYSPR 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2598 250 MobiDBLite consensus disorder prediction 127 250 - -
Glsi12g2598 250 MobiDBLite consensus disorder prediction 234 250 - -
Glsi12g2598 250 SUPERFAMILY RNA-binding domain, RBD 47 155 IPR035979 GO:0003676
Glsi12g2598 250 MobiDBLite consensus disorder prediction 22 44 - -
Glsi12g2598 250 MobiDBLite consensus disorder prediction 1 54 - -
Glsi12g2598 250 SMART rrm1_1 51 124 IPR000504 GO:0003723
Glsi12g2598 250 ProSitePatterns Protamine P1 signature. 2 12 IPR000221 GO:0000786|GO:0003677|GO:0005634|GO:0007283|GO:0035092
Glsi12g2598 250 FunFam Serine/arginine-rich SC35-like splicing factor SCL28 2 143 - -
Glsi12g2598 250 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 50 128 IPR000504 GO:0003723
Glsi12g2598 250 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 46 243 - -
Glsi12g2598 250 MobiDBLite consensus disorder prediction 174 233 - -
Glsi12g2598 250 MobiDBLite consensus disorder prediction 136 150 - -
Glsi12g2598 250 MobiDBLite consensus disorder prediction 1 21 - -
Glsi12g2598 250 SMART rrm2_1 51 124 IPR003954 GO:0003676
Glsi12g2598 250 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 52 122 IPR000504 GO:0003723
Glsi12g2598 250 Gene3D - 2 142 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2598 Glsi-ChrGlsi12 39587618 39592246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2598 54 112 Eukaryotic Initiation Factors Gene Family AT3G11400 45.763 1.28e-07 49.7