Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2597 ATGGAAACCCAAGCCATTTCGACACCTAGATCACCCGAACCATCCTCATCGTCGCCGTCTCAGTCACTGCCACCATCGGCTCTCGGCCACCGAACAGGGGATCCAGAGATGGAGGTGCAACAGCGCTTGTCGGAAGACCCTTCATCTGTTTGGGACCTTGATTACCTGTTAGATTTCAGCTTAGACGATCAATTAGCTGTCGCCTTAGATGAATATCACCATAATTTGGAGGAACCCGAACCATTGAGGCTTCCTCCGCAAGAGATTCCCAGTAACGATAAGATCCGCAAGCGAGACCCCAGGTTGACTTGCTCAAATTTTGTTGCGGGTCTGGTCCCATGTGCCTGCCCGGAACTCGATGCGAAGCTTGAGGAAGAAGGTTTGCCTGGTAAGAAGCGGGCTCGGACTGTGCGTGCATCGGCCGGGACTGCGCGGTGCCAGGTACCTGGGTGCGAGGCAGATATTAGTGAGCTCAAGGGGTATCATCGGAGGCATAGGGTTTGTTTGCGTTGCGCAAATGCTAGCACGGTTATGCTTGATGGGGAGGCCAAGAGATACTGCCAACAGTGTGGAAAGTTTCACATATTATCAGATTTTGATGAAGGTAAACGAAGCTGTAGAAGAAAATTGGAGCGCCACAACAACCGAAGGCGAAGAAAGCCTACAGATTCCAGAGCTGCAGCTGATCATGAATTTCAACCTGTTACGCAGACTGAGGACGAAGGGGGAAAAGATAGCTCATATTTGAGCAGTGAGATAAACGAAAAAGGAGCTGCACTGGAGCACGAAGATGGGCAAAATCCTACCCTATGTTCAGCTTCTGATACCCTGAATGTTAACAGTGATACTGTTGTATCTTTTGTTGCTTCTGGTGAAACGCAAGTGAATGGTGGAAAAGATAATTCTAATATTTCTAATTCACCATCATATTGTGACAGGAGTGCTTACTCATCCATGTGCCCAACAGGTCGGATATCTTTTAAGCTTTATGATTGGAATCCTGCAGAATTTCCTAGAAGACTACGGCACCAAATATTCCAATGGTTGACTAGTATGCCTGTTGAGCTTGAGGGCTATATCCGCCCTGGGTGTACGATCCTGACAGTTTTTATTACAATGCCAAAATTTATGTGGACAAGTTTACTTGAAGATCCTTTGTATTATGTGCATGACCTTGTTGCTCCAGGAAAGATGCTATATGGAAGAGGCACCATACTAGTTCATCTAAATGACATGATCTTCCGTGTTATGAGAGATGAAACTTCTGTCATGAAAGTCCAGATAAAGGTGCAGGCACCAAGGCTTCACTATGTTCATCCCACATACTTTGAGGCTGGAAAACCTATGGAATTTGTTGCTTGTGGAAGTAACTTGCTGCAACCTAAGTTTCGGCTTCTGGTATCCTTTTCTGGAAAGTATTTAGAGTATGAATACTGTGTTGCGTCTCCTCATAACTGGACCGGAGACAGCATTTCTTGTGCTTTTGACAATCAGTTGTACAAGATATATGTCCCTCACATAGAGCCAAATATCTTTGGGCCTGCATTTATTGAGGTGGAGAATGAGTCTGGTTTATCAAACTTCATACCTGTACTCATTGGAGACAAGGAAATCTGCTCCGAAGTGAAGACACTGCAGCAAAAACTAGATGTGTCTCTCCTTTCTAAACAATTCCAGTCTGCATCTGATGGTTCTATCTGCAGCTCCTGTGAAGCTTTTGTACTGAGACATACAGCATATTCAGACTTACTTTTAGATATAGCATGGTTGCTTAAGGATCCTACTTCAGAAAAATTTCATAGAGCTATGACAGCTTCACAAATTCAGCGATTTTGTTATTTAATAGACTTTCTGATGTGCAATGAGTCAACCATCATTTTGGGGAAAATATTACAGAATTTGATGATTTTGACTGAAAGCGTGGAATCAAACTATGTAATTAATAGGATGAGTGAAGTTGATTTGACATTACTACTGAATCACATGTATCTTGCTAGAGATTTCCTTTATCAGAGACATCAGGAGGGTGGAGATTTAGTTCTGCATTCAATTTCCTCTGAAATGGAAGGACATAAAGTTGCTCAAAGCTACTATCCAGATAACATGTCATCAGTTATTGCAATTAACAGTCAGGGTACTGAGTCAGGAATAGATGCTAAGTTGGGAGTACTGAGAAGTCTAACTTCTAATGACAAAAGTGAAAGGATACCTCTTCTGAAGAGGGAGATTATAATGAATGTGCAAGAATTGCCTAGAAAATCAGGTTATCGGTTTCTTGCCAGGGGATTCTTGAGCTTTCGGCCTGCAATCCTAGTGATTGCTTCAGTTGCTGTTTGTGTTGGGGTTTGCGCAGCCCTCCTTCATCCTGGGAGGGTTAGCGAGTTTGCAGTTTCAATTAGAAGGTGCTTGTCGTAG 2415 0.4352 METQAISTPRSPEPSSSSPSQSLPPSALGHRTGDPEMEVQQRLSEDPSSVWDLDYLLDFSLDDQLAVALDEYHHNLEEPEPLRLPPQEIPSNDKIRKRDPRLTCSNFVAGLVPCACPELDAKLEEEGLPGKKRARTVRASAGTARCQVPGCEADISELKGYHRRHRVCLRCANASTVMLDGEAKRYCQQCGKFHILSDFDEGKRSCRRKLERHNNRRRRKPTDSRAAADHEFQPVTQTEDEGGKDSSYLSSEINEKGAALEHEDGQNPTLCSASDTLNVNSDTVVSFVASGETQVNGGKDNSNISNSPSYCDRSAYSSMCPTGRISFKLYDWNPAEFPRRLRHQIFQWLTSMPVELEGYIRPGCTILTVFITMPKFMWTSLLEDPLYYVHDLVAPGKMLYGRGTILVHLNDMIFRVMRDETSVMKVQIKVQAPRLHYVHPTYFEAGKPMEFVACGSNLLQPKFRLLVSFSGKYLEYEYCVASPHNWTGDSISCAFDNQLYKIYVPHIEPNIFGPAFIEVENESGLSNFIPVLIGDKEICSEVKTLQQKLDVSLLSKQFQSASDGSICSSCEAFVLRHTAYSDLLLDIAWLLKDPTSEKFHRAMTASQIQRFCYLIDFLMCNESTIILGKILQNLMILTESVESNYVINRMSEVDLTLLLNHMYLARDFLYQRHQEGGDLVLHSISSEMEGHKVAQSYYPDNMSSVIAINSQGTESGIDAKLGVLRSLTSNDKSERIPLLKREIIMNVQELPRKSGYRFLARGFLSFRPAILVIASVAVCVGVCAALLHPGRVSEFAVSIRRCLS 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2597 804 Pfam SBP domain 146 220 IPR004333 GO:0003677
Glsi12g2597 804 MobiDBLite consensus disorder prediction 1 27 - -
Glsi12g2597 804 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 12 617 IPR044817 GO:0003677
Glsi12g2597 804 ProSiteProfiles Zinc finger SBP-type profile. 143 220 IPR004333 GO:0003677
Glsi12g2597 804 MobiDBLite consensus disorder prediction 210 249 - -
Glsi12g2597 804 MobiDBLite consensus disorder prediction 1 46 - -
Glsi12g2597 804 Gene3D - 142 207 IPR036893 GO:0003677|GO:0005634
Glsi12g2597 804 SUPERFAMILY SBT domain 144 224 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2597 Glsi-ChrGlsi12 39575265 39583989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2597 36 800 SBP-box Gene Family AT5G18830 47.177 0.0 707
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Glsi12g2597 SBP 5.3e-28 No_clan