Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2589 ATGGGCCAGCAGGGTGGTCATAAAGAAATTCAAGCTGCGGCAACCGAAATAGCATGCCAACCACTCCTTTCTCGTCTCTCCGTTTCTCCTTTCTCTGTCTTTGCCTTCTTCTCCGTCTCTTGCCTTCTTCGTTTTCAGATCTCTCTGTATTCTGTGTTATTTGCTGAGAAAGAAGATGATATTGGCAGCGCTGAATTCCCGGACTTCGAAAAAGAGGGTATAGAAGCAGACACTTTTTCTATAAGAAACAGAAGACCTCGGGCTGGATCTTCTGATTCTTTTTCAGGCGTCGGTAATTTTTCCTCCTTCTCTCCTTTAAACGTCGAGGAGGAAGGCATACCCAATTGCTCTGCTAGAAGCGTGTCAGAGGACTGCTCAAGAAGTGTAGAATCTGAAACCCCTTCTTCCAATGCCAGCTCGTCTGATTCAGAGGGTCAGCCAGATGTAGGAAACAATGGCCAGTGGCGTGGTTTCTTGCGTTTTATGAAAAAAGGATCCCAGATGCGAGTCAATACTCCACCTAAAAGCGTTCCAAAACTCACCAGAAAAACAATTAAAAGAATCAGGATGGACCAGATCCCTACTCTGAATTCTCCACCTCCAATGTCATCTCTTGACCCAGATTTTTGCTGCTTTAAATCTTCGTGGATAAATTTCACTCTTTCAGAGCTCCAAGCTGCCACCGACAACTTCAGCCCTGAGTTTTTGATTGGGGAAGGAGGTTATGCTGAGGTTTACAAAGGAAAATTGGAAGATGGGAAGTTTGTAGCAATTAAACGGCTGACAAGAGGAAGCCAAGAAGAAATGACTGCAGATTTCTTATCTGAACTTGGTATTATAGTGCATGTCGACCATCCTAATATTGCTGGATTGATAGGATATGGTGTTGAAGGGGGAATGTTTCTTGTTCTCCAGTTGTCTCCACATGGCAGCCTAGCATCCATACTTTATGGACCTCGAGAGAAACTGGATTGGAGTATGAGATATAAGGTTGCTTTAGGGACTGCCGAGGGCCTTCACTATCTACACGAGGGATGTCAAAGAAGGATTATTCACAGAGATATCAAGGCTTCTAATATTTTGCTCTCAGAGGATTTTGAGCCTCAGGTAGCTGATTTTGGGCTTGCAAAGTGGTTACCTGATCAATGGACTCACCATACTATCTCTAAAATTGAAGGCACATTCGGCTACCTTCCTCCTGAATTCTTCATGCATGGGATAGTAGATGAAAAGACAGATGTCTATGCTTATGGAGTGCTATTATTGGAGCTCATTACCGGACGACAAGCTTTGGATAGCTCGCAGAAAAGTCTGGTGATGTGGGCAAAACCTTTGCTATCTGCAGATAAAATCAAAGAGCTTGTTGATCCATGTCTGACTGATGCTTATGATGAAGAACAGATGAAAATTATAGCCTTGATAGCTTCTTTGTGTATAGATCAGTCTTCAGCTCAGCGACCAGAAATGGGCCAGGTATTGAAGAGTCTAAAAGGTGATGAAGAAAGCGTGAAGTTCATGATAGAACGTCAGAAGTCTAAACTTCGAAGGACGTACTCTGAAAACTCTGATGCAGAAGAGTACGATTCAACAAAACTTTTGAATGACGTTAATCGACATATGAAGACTGTTCTAAGCTCCTCTAACTCTATTATGCTAAGAAGTACGGATTTCGAGACAGAGATGATACACGATGTGTTACAGACAAACACAAATACAGTGCAGGATAAAACACAAATAGACACACAAATATAA 1752 0.4252 MGQQGGHKEIQAAATEIACQPLLSRLSVSPFSVFAFFSVSCLLRFQISLYSVLFAEKEDDIGSAEFPDFEKEGIEADTFSIRNRRPRAGSSDSFSGVGNFSSFSPLNVEEEGIPNCSARSVSEDCSRSVESETPSSNASSSDSEGQPDVGNNGQWRGFLRFMKKGSQMRVNTPPKSVPKLTRKTIKRIRMDQIPTLNSPPPMSSLDPDFCCFKSSWINFTLSELQAATDNFSPEFLIGEGGYAEVYKGKLEDGKFVAIKRLTRGSQEEMTADFLSELGIIVHVDHPNIAGLIGYGVEGGMFLVLQLSPHGSLASILYGPREKLDWSMRYKVALGTAEGLHYLHEGCQRRIIHRDIKASNILLSEDFEPQVADFGLAKWLPDQWTHHTISKIEGTFGYLPPEFFMHGIVDEKTDVYAYGVLLLELITGRQALDSSQKSLVMWAKPLLSADKIKELVDPCLTDAYDEEQMKIIALIASLCIDQSSAQRPEMGQVLKSLKGDEESVKFMIERQKSKLRRTYSENSDAEEYDSTKLLNDVNRHMKTVLSSSNSIMLRSTDFETEMIHDVLQTNTNTVQDKTQIDTQI 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2589 583 Gene3D Transferase(Phosphotransferase) domain 1 308 524 - -
Glsi12g2589 583 ProSitePatterns Protein kinases ATP-binding region signature. 237 259 IPR017441 GO:0005524
Glsi12g2589 583 ProSitePatterns Serine/Threonine protein kinases active-site signature. 350 362 IPR008271 GO:0004672|GO:0006468
Glsi12g2589 583 ProSiteProfiles Protein kinase domain profile. 231 506 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g2589 583 MobiDBLite consensus disorder prediction 127 154 - -
Glsi12g2589 583 SUPERFAMILY Protein kinase-like (PK-like) 212 496 IPR011009 -
Glsi12g2589 583 SMART serkin_6 231 471 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g2589 583 Gene3D Phosphorylase Kinase; domain 1 203 305 - -
Glsi12g2589 583 Coils Coil 576 583 - -
Glsi12g2589 583 Pfam Protein tyrosine and serine/threonine kinase 237 496 IPR001245 GO:0004672|GO:0006468
Glsi12g2589 583 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK1 207 306 - -
Glsi12g2589 583 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 308 510 - -
Glsi12g2589 583 MobiDBLite consensus disorder prediction 127 150 - -
Glsi12g2589 583 PANTHER OS08G0249100 PROTEIN 115 539 IPR046958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2589 Glsi-ChrGlsi12 39533791 39538910 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2589 203 531 Receptor kinase-like Gene Family AT1G53420 38.576 2.17e-70 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Glsi12g2589 PK_Tyr_Ser-Thr 4.1e-40 CL0016