Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi12g2558 ATGCTGCCTGATCAAAGAAAAAAGTCCTCTGTGGATGTAGACTTCTTCACTGAATATGGAGAAGGGAGCAGATACAGAATAGAGGAAGTAATTGGTAAAGGAAGTTATGGTGTTGTTTGCTCTGCATATGATACACACACTGGAGAAAAAGTTGCAATAAAGAAGATCAATGACATATTTGAGCATGTTTCTGATGCCACCCGCATTCTTCGCGAGATTAAGCTTCTTAGACTCTTACGTCATCCAGATATTGTGGAGATCAAGCATATATTGTTACCTCCTTCTAGGAGGGAATTCAAAGATATATATGTTGTTTTTGAACTCATGGAATCTGATTTACATCAGGTCATCAAAGCAAATGATGATTTGACTCCTGAGCATTACCAATTTTTTCTCTATCAGCTTCTTCGAGGCTTGAAGTACATACACACAGCTAATGTTTTTCACCGAGATCTAAAGCCAAAAAACATTTTAGCAAATGCTGACTGCAAGCTTAAGATCTGTGACTTTGGTCTTGCCAGAGTAGCTTTTAATGATACGCCGATGGCCATATTCTGGACAGATTATGTTGCAACAAGGTGGTATCGGGCTCCTGAGTTGTGTGGATCCTTTTTCTCCAAGTATACACCAGCTATAGATATATGGAGCATTGGCTGCATTTTTGCAGAACTTTTAACTGGAAAACCTCTTTTCCCGGGGAAGAATGTTGTCCATCAGTTAGACCTCATGACTGATCTTCTTGGAACACCATCTCTCGAAGCCATTGCTAGGGTACGAAATGAGAAAGCTCGGAGATACTTGAGTAGCATGCGAAGGAAGAAACCAGTTCCTTTCTCCCAGAAGTTTCCTAATGCAGATCCCCTTGCTCTTCGTTTGTTAGAAAGAATGCTGGCATTTGAACCAAAGGATCGACCTACTGCTGAAGAGGCTCTAGCAGACCCATATTTTAAAGGCTTGGCCAAAGTGGAGAGAGAGCCATCTGCTCAGCCAGTTACCAAGATGGAATTTGAATTTGAGAGACGCAGAATCACGAAGGAAGATGTGCGGGAGCTCATATACCGAGAGATCCTGGAGTTCCATCCGAAGATGTTGAAGGAATTTCTAGAGGGAGCAGAGCCAACTAATTTCATGTATCCAAGTGCTGTGGACCACTTCAAGAAGCAATTTGCATATCTCGAGGAGCACTATGGGAAAGATGGAACTGTTGCCCCACCTGAGAGGCAGCATGCATCATTACCCAGGCCATGTGTGTTATATTCAGATAACTCAACACAGAATACAGCTCAGGTTGCAAATAGTCTCTCCAAGTGTTGCATCAAGGAAGTGGAGAAGCCAACCATTAATAGGAGCGGTGTTGTCCCTGTGACTCGGCTTCCTCCACAGGTTCCTCAAAATGTTCAAGGTGTTGCTGCAAGGCCTGGAAAAGTTGTTGGTTCAGTATTGCGATACAACAACTGCGGAGTTGTAGCAACAGCAGAGGCTCTTGAACAGCGGAGGATAATTAGAAACCCGTCTGTTTCAGCCCAATATGCTACATCGAGCTGTTCATATCCTAGAAGAAACGCAAGCTGTAAAAATGAGAGGGCAGAAGATGATGGGATTGAAGGTTCTAATGGGCTGCAGCCGAAGCCTCAGTATGTGGCTAGAAAAGTTGCTGCTGCTCAAGGTGAAGCTGGTGGTCATTGGTATTGA 1692 0.435 MLPDQRKKSSVDVDFFTEYGEGSRYRIEEVIGKGSYGVVCSAYDTHTGEKVAIKKINDIFEHVSDATRILREIKLLRLLRHPDIVEIKHILLPPSRREFKDIYVVFELMESDLHQVIKANDDLTPEHYQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVAFNDTPMAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAELLTGKPLFPGKNVVHQLDLMTDLLGTPSLEAIARVRNEKARRYLSSMRRKKPVPFSQKFPNADPLALRLLERMLAFEPKDRPTAEEALADPYFKGLAKVEREPSAQPVTKMEFEFERRRITKEDVRELIYREILEFHPKMLKEFLEGAEPTNFMYPSAVDHFKKQFAYLEEHYGKDGTVAPPERQHASLPRPCVLYSDNSTQNTAQVANSLSKCCIKEVEKPTINRSGVVPVTRLPPQVPQNVQGVAARPGKVVGSVLRYNNCGVVATAEALEQRRIIRNPSVSAQYATSSCSYPRRNASCKNERAEDDGIEGSNGLQPKPQYVARKVAAAQGEAGGHWY 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi12g2558 563 ProSitePatterns Protein kinases ATP-binding region signature. 31 55 IPR017441 GO:0005524
Glsi12g2558 563 FunFam Mitogen-activated protein kinase 15 119 - -
Glsi12g2558 563 SUPERFAMILY Protein kinase-like (PK-like) 22 320 IPR011009 -
Glsi12g2558 563 ProSiteProfiles Protein kinase domain profile. 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g2558 563 Gene3D Transferase(Phosphotransferase) domain 1 111 339 - -
Glsi12g2558 563 MobiDBLite consensus disorder prediction 516 542 - -
Glsi12g2558 563 ProSitePatterns MAP kinase signature. 60 163 IPR003527 GO:0004707|GO:0005524|GO:0006468
Glsi12g2558 563 Gene3D Phosphorylase Kinase; domain 1 40 361 - -
Glsi12g2558 563 CDD STKc_TDY_MAPK 24 361 - -
Glsi12g2558 563 Pfam Protein kinase domain 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g2558 563 SMART serkin_6 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi12g2558 563 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 24 347 - -
Glsi12g2558 563 FunFam Mitogen-activated protein kinase 111 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi12g2558 Glsi-ChrGlsi12 39352148 39358565 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi12g2558 1 563 MAP Kinase Gene Family AT5G19010 79.791 0.0 941
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Glsi12g2558 Pkinase 4.3e-68 CL0016